PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_06175A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 178aa MW: 19009.1 Da PI: 9.2266 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.7 | 5.1e-13 | 39 | 83 | 3 | 47 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 e +r rrk++NRe+ArrsR+RK++ ++ L +++L+ Nk+L Oropetium_20150105_06175A 39 ENRRKRRKESNRESARRSRLRKQQHLDDLNAQADQLKDHNKQLGA 83 5689*************************************9974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.4E-10 | 34 | 84 | No hit | No description |
SMART | SM00338 | 8.9E-12 | 37 | 101 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.507 | 39 | 81 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.2E-10 | 39 | 82 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.34E-10 | 41 | 90 | No hit | No description |
CDD | cd14702 | 2.32E-16 | 42 | 90 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 44 | 59 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MSMSGTSSGG GSAASSLGGT SRSSEDDVMN NLHLQAQMEN RRKRRKESNR ESARRSRLRK 60 QQHLDDLNAQ ADQLKDHNKQ LGAALRVTAQ SLVAVQAQNS VLQTQKMELE SRLGSLTEIL 120 LYLNAGTATT TSAVNSNSTV MNHHASIATA SSGACDVLAL GAASTWTQPV DLYYPCF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 41 | 46 | RKRRKE |
2 | 53 | 59 | RRSRLRK |
3 | 53 | 60 | RRSRLRKQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_06175A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577967.1 | 7e-50 | bZIP transcription factor 44 | ||||
TrEMBL | A0A0A9GYA3 | 2e-60 | A0A0A9GYA3_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ba02250.1.p | 1e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18160.1 | 6e-12 | basic leucine-zipper 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_06175A |