PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06168A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 372aa    MW: 40414.6 Da    PI: 7.3987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06168AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05181200120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C  C+k+F+r  n++ H+
  Oropetium_20150105_06168A 181 FSCAVCNKTFNRFNNMQMHM 200
                                89*****************9 PP
2zf-C2H213.60.0002272294123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y C  Cgk+F  + + ++H +++
  Oropetium_20150105_06168A 272 YACRRCGKRFAVRGDWRTHEKNC 294
                                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-5162202No hitNo description
SMARTSM003550.64181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055181208IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-5181200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM00355210235267IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.91E-6258292No hitNo description
Gene3DG3DSA:3.30.160.601.0E-6258292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704272292IPR007087Zinc finger, C2H2
SMARTSM0035558272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MHSYRAMHPY THQYQHASSV PSSKQHGYHG ENDNDDDQSM LRLSLWPPGH HHHGSPACSS  60
SPSIVSTTTS MAAAAASSSS YPWLNHQQGH YLGVGSSSSS HGRNFLFHEQ LQQQQDPADV  120
SISLSIAPPC SNAAGGGFAS APPAALSSSA VTTTVTPGGN QVPSQYWIPS PAEILVGSTQ  180
FSCAVCNKTF NRFNNMQMHM WGHGSQYRKG SDSLRGAITA VGASPPASLM RLPCYCCAEG  240
CRNNVDHPRA RPLKDFRTLQ THYRRKHGAR PYACRRCGKR FAVRGDWRTH EKNCGRLWFC  300
VCGSDFKHKR SLKDHVRSFG GGHAPHIVES SISAAVEEDD DEEDEHDGDG DHHMDDNGGI  360
IGGEPTDMVV V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06168A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956529.11e-166zinc finger protein WIP6
SwissprotQ9FX683e-97ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A368Q0C21e-165A0A368Q0C2_SETIT; Uncharacterized protein
STRINGSb02g020840.11e-163(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.12e-97C2H2-like zinc finger protein