PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06160A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 572aa    MW: 63645 Da    PI: 4.4351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06160AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.7e-1578127255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                ++ GVr ++ +g+W+AeIrdp    +r kr ++g++gt+eeAa+a+ a +++++ 
  Oropetium_20150105_06160A  78 RFCGVRMRR-WGKWAAEIRDP----IRkKRMWIGTYGTEEEAAAAYQAQARQFRA 127
                                566***998.**********7....246******************988887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-1377110No hitNo description
SuperFamilySSF541711.18E-1577128IPR016177DNA-binding domain
PROSITE profilePS5103218.43978137IPR001471AP2/ERF domain
PfamPF008475.8E-978126IPR001471AP2/ERF domain
SMARTSM003801.2E-1678143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1978127IPR001471AP2/ERF domain
PRINTSPR003671.5E-67990IPR001471AP2/ERF domain
PRINTSPR003671.5E-6101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MTSLCKVRIF CNDPDATDSS DDEDDQKPKK EKRMIREVLL PVNNSNATLV PVKTSKKAKT  60
HVSRGTEDPP EKREASSRFC GVRMRRWGKW AAEIRDPIRK KRMWIGTYGT EEEAAAAYQA  120
QARQFRAELL VMKAQLPVSE PAALSTSSSV SCVSSSVSCE QVAQVAQNSV FMETECEPVD  180
DLLMDFSDRP RAKEMSMDVL LGRRIEELPI SDSVSRGDER RHDDFTSSED MFPISDFVGV  240
THEPLDDYIG LADISHLPLP FKDPEFDLDT ELDWSGFDFA SMERQLQMSP PVLNVRIMFS  300
DPDATDSSDD EDDQESKKEK RIIREVVIPV NKSKATLVPV KTSEKAKTLM SCETEDLKGP  360
EKKKASSTSR SEEASAAYQA QARKFHAELL ATQRRVSTKR MECSTHGTEE EAAAAYQAQR  420
PVSEPAALPS SSSLSRRSVS VPCKQEVEVH NGMGVSPMEI DPKPTTGEST ILNSSPQTET  480
SVIALLEQVD ELPVSDSAII PAADNPSPRD EFPVSDFLGA MHDPLEENDY IDLADISHLP  540
LSFKDPTFDL DAEPDWSLFD FDSFERDLND K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06160A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956545.12e-94ethylene-responsive transcription factor ERF021
RefseqXP_004956547.12e-94ethylene-responsive transcription factor ERF021
RefseqXP_022679717.12e-94ethylene-responsive transcription factor ERF021
TrEMBLA0A0A9DCI81e-103A0A0A9DCI8_ARUDO; Uncharacterized protein
STRINGPavir.Ba02999.1.p6e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-12cytokinin response factor 4