PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06159A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 385aa    MW: 42410.6 Da    PI: 8.0768
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06159AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.2e-081475756
                               --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
                   Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                               f ++++ e+e+  ++  n+ p+++  + LA+k           +++ +qV +WFqNrR+ ++
  Oropetium_20150105_06159A 14 FLPSEVAEMESRLQQlnNSVPNRAVLQALADKFsasperagrvSIQPKQVWNWFQNRRYSHR 75
                               55677888888888666999***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.139577IPR001356Homeobox domain
SMARTSM003890.0012781IPR001356Homeobox domain
SuperFamilySSF466895.99E-101278IPR009057Homeodomain-like
CDDcd000861.30E-41375No hitNo description
Gene3DG3DSA:1.10.10.603.0E-61478IPR009057Homeodomain-like
PfamPF000467.9E-61475IPR001356Homeobox domain
PfamPF167197.4E-42139265IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGRPQSNGAP AFRFLPSEVA EMESRLQQLN NSVPNRAVLQ ALADKFSASP ERAGRVSIQP  60
KQVWNWFQNR RYSHRAKNVH RPALPPPPPT KMTPTGADRI QHAAPASAFR AAQAPPAAAG  120
AHPGSSPSAG KGGTEGAPVE FEAKSARDGA WYDVAAFLSH RMFESGDPEV RVRFSGFGAE  180
EDEWINVRKC VRQRSLPCEA TECVAVLPGD LILCFQEGKE QALYFDAIVL DAQRRRHDVR  240
GCRCRFLVRY KHDDSEEIVP LRKVCRRPET DYRLQILHAA RAAAASADNR TQPKEVKMES  300
ASNENSSVEQ KPSKQHKMMD VNTDKVTMVS EQEEAAGKNV RPTVSTLAES RNDSSSDVTM  360
KDAEPASVVE VDEVKVLDKV KEGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A9e-471372692134SHH1 SAWADEE
4iur_B9e-471372692134SHH1 SAWADEE
4iut_A9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B9e-471372692134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06159A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-125SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A3L6QQ050.0A0A3L6QQ05_PANMI; Uncharacterized protein
STRINGPavir.Bb01334.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-104sequence-specific DNA binding transcription factors;sequence-specific DNA binding