PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06099A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 361aa    MW: 41055.1 Da    PI: 8.5684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06099AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-05278297120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C++C++ +++ snLk H+
  Oropetium_20150105_06099A 278 WTCHICNTKCTSASNLKDHL 297
                                58*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-9264311No hitNo description
SMARTSM004519.1E-4275309IPR003604Zinc finger, U1-type
PfamPF128742.8E-7278302No hitNo description
SMARTSM003550.15278302IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280302IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-6323359No hitNo description
SMARTSM004510.0075326360IPR003604Zinc finger, U1-type
PfamPF128741.7E-4329348No hitNo description
SMARTSM003558.7329353IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280331353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEYSFDRSTQ ESRRANYVTI SRLLSVLTSP NNLPLIHPAS EQPWPGRDTE REQQQECRSS  60
GEMEHHMSGY VELCPSPRKQ IPIDDTLVPV IANAVNRSAL PPSLGEEMAL EHRRKIGGEP  120
KVDDVEDDHG VRPLYNNRNQ SNDQRKVVES HMAARIDKPL QSHSEDNTAH KEFSEPTPVR  180
ISPALKRRLS AATPLPKKKK PLEETSSPLN HVDSTRQLHQ SNVKVESLQA RIKPTQPELN  240
MKAMPGQGNS GRNWEPVRWD GKENVAEKKG SEDRLERWTC HICNTKCTSA SNLKDHLGGR  300
RHRERIEAIL GEFRSSYRRM EAESGKGAYY CDICKVRCAD DTVMASHLTW RKHRETLQQL  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185199KRRLSAATPLPKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06099A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1490522