PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_06049A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 35883.9 Da PI: 6.1457 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.3 | 2.4e-43 | 19 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk...kvka.....eekew.yfFskrdkkyatgkrk 74 lppGfrF+Ptdeel+++yL++k+++ + v++evd+y++ePwdL p+ + + e++ + yfF+ r+ k ++g r+ Oropetium_20150105_06049A 19 LPPGFRFRPTDEELLTHYLARKAADPGFAP-AVVREVDLYRAEPWDLvPAaatN--GgdgggEDDGCrYFFCARRVKFPSGLRA 99 79*************************888.79**************5443440..244443444556**************** PP NAM 75 nratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat++gyWk+tgkdk v ++ +g g+kktLvfy+grapk+ kt+W mheyrl Oropetium_20150105_06049A 100 NRATRAGYWKSTGKDKVVAARhgrdgaGGVPLGVKKTLVFYRGRAPKADKTSWAMHEYRL 159 ********************96655555555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-50 | 17 | 191 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.978 | 19 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-26 | 20 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGNDDHRDRL PSTGTPRPLP PGFRFRPTDE ELLTHYLARK AADPGFAPAV VREVDLYRAE 60 PWDLVPAAAT NGGDGGGEDD GCRYFFCARR VKFPSGLRAN RATRAGYWKS TGKDKVVAAR 120 HGRDGAGGVP LGVKKTLVFY RGRAPKADKT SWAMHEYRLV PGHSACSSSQ TFSPRDGAHQ 180 IEWVVCRVFM KKQPPGEASQ QQETVLHPPH GDHLQVFSTD DVKTTQEAAA TAASSEQRNP 240 FNGPDDEAIA PGDHHETNQG LQLQLNHEGL LMVNFPETED DMSSSSALAQ GTLLRQELAA 300 DYSSLDLDGI LPLLLDYEGF PFVHDHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-41 | 19 | 192 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-41 | 19 | 192 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-41 | 19 | 192 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-41 | 19 | 192 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-41 | 19 | 192 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-41 | 19 | 192 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-41 | 19 | 192 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_06049A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462370.1 | 2e-84 | NAC domain-containing protein 92 | ||||
Refseq | XP_025801567.1 | 2e-84 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLR3 | 6e-50 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A1E5UYL6 | 5e-92 | A0A1E5UYL6_9POAL; NAC domain-containing protein 79 | ||||
STRING | Sb02g024530.1 | 8e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15352 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-46 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_06049A |
Publications ? help Back to Top | |||
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