PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05962A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 307aa MW: 33807.2 Da PI: 4.4804 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.3e-19 | 93 | 148 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++t+eq+++Le Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa+++ Oropetium_20150105_05962A 93 TTKRRLTAEQVQALELSFEEeKRTLEPERKSELARRLGIAPRQVAVWFQNRRARWR 148 67889**************98**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.1 | 4.9e-38 | 94 | 185 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 krrl++eqv++LE sFeee+ +LeperK+elar+Lg+ prqvavWFqnrRAR+++kqlE+d+++Lk+a+d+l + +++L +++ Oropetium_20150105_05962A 94 TKRRLTAEQVQALELSFEEEKrTLEPERKSELARRLGIAPRQVAVWFQNRRARWRAKQLERDFDRLKAAHDELLAGRDALVADN 177 59****************9999************************************************************** PP HD-ZIP_I/II 85 eeLreelk 92 ++Lr+++ Oropetium_20150105_05962A 178 DRLRSQVV 185 ****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.7E-17 | 81 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 89 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-15 | 91 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.84E-15 | 92 | 151 | No hit | No description |
Pfam | PF00046 | 4.0E-16 | 92 | 148 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-19 | 99 | 149 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.2E-6 | 121 | 130 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.2E-6 | 130 | 146 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.4E-15 | 150 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGDSSRLISS AVPFRAPGGQ MLLFGGGSFR GGGAPIATAG AENGQRKRPL LMSAHEEELH 60 QLHLGLEVPD DDVDQLCGSF EYELHQGAPP ERTTKRRLTA EQVQALELSF EEEKRTLEPE 120 RKSELARRLG IAPRQVAVWF QNRRARWRAK QLERDFDRLK AAHDELLAGR DALVADNDRL 180 RSQVVTLTEK LQATESPASH ESDEQAATET IAMQAAVVFV QLDDEGQLRR ETTADNAVPT 240 QGFSGGNSNP SPESYFAGSP SPEQSSEGDC GDENSVLLQP DAMILLSAVE HATERAEEDS 300 WEWYWN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05962A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356850 | 2e-87 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462311.1 | 6e-80 | homeobox-leucine zipper protein HOX25 | ||||
Swissprot | A3BYC1 | 2e-69 | HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25 | ||||
TrEMBL | A0A1E5WAR0 | 2e-81 | A0A1E5WAR0_9POAL; Homeobox-leucine zipper protein HOX25 | ||||
STRING | Sb02g023650.1 | 2e-79 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12756 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-42 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05962A |