PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05962A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 307aa    MW: 33807.2 Da    PI: 4.4804
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05962AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-1993148256
                                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 +++++t+eq+++Le  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa+++
  Oropetium_20150105_05962A  93 TTKRRLTAEQVQALELSFEEeKRTLEPERKSELARRLGIAPRQVAVWFQNRRARWR 148
                                67889**************98**********************************9 PP

2HD-ZIP_I/II118.14.9e-3894185292
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 krrl++eqv++LE sFeee+ +LeperK+elar+Lg+ prqvavWFqnrRAR+++kqlE+d+++Lk+a+d+l + +++L +++
  Oropetium_20150105_05962A  94 TKRRLTAEQVQALELSFEEEKrTLEPERKSELARRLGIAPRQVAVWFQNRRARWRAKQLERDFDRLKAAHDELLAGRDALVADN 177
                                59****************9999************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                ++Lr+++ 
  Oropetium_20150105_05962A 178 DRLRSQVV 185
                                ****9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.7E-1781152IPR009057Homeodomain-like
PROSITE profilePS5007117.29789150IPR001356Homeobox domain
SMARTSM003895.5E-1591154IPR001356Homeobox domain
CDDcd000864.84E-1592151No hitNo description
PfamPF000464.0E-1692148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-1999149IPR009057Homeodomain-like
PRINTSPR000313.2E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000313.2E-6130146IPR000047Helix-turn-helix motif
PfamPF021837.4E-15150192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGDSSRLISS AVPFRAPGGQ MLLFGGGSFR GGGAPIATAG AENGQRKRPL LMSAHEEELH  60
QLHLGLEVPD DDVDQLCGSF EYELHQGAPP ERTTKRRLTA EQVQALELSF EEEKRTLEPE  120
RKSELARRLG IAPRQVAVWF QNRRARWRAK QLERDFDRLK AAHDELLAGR DALVADNDRL  180
RSQVVTLTEK LQATESPASH ESDEQAATET IAMQAAVVFV QLDDEGQLRR ETTADNAVPT  240
QGFSGGNSNP SPESYFAGSP SPEQSSEGDC GDENSVLLQP DAMILLSAVE HATERAEEDS  300
WEWYWN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05962A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568502e-87AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462311.16e-80homeobox-leucine zipper protein HOX25
SwissprotA3BYC12e-69HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A1E5WAR02e-81A0A1E5WAR0_9POAL; Homeobox-leucine zipper protein HOX25
STRINGSb02g023650.12e-79(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-42homeobox 1