PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05911A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 445aa MW: 47347.1 Da PI: 6.2452 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.1 | 7e-39 | 114 | 214 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkC++dC lapyfpae+++ f n+h+lFG++n++k+l+++++e ++am++l+y++eara dPvyG+vg+i++l+ Oropetium_20150105_05911A 114 ACAACKYQRRKCNPDCSLAPYFPAENQRLFLNAHRLFGVRNIQKTLQRISPEYGPEAMRALIYQSEARAADPVYGCVGIIKNLE 197 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkeel 101 ++++ +ael++l++++ Oropetium_20150105_05911A 198 HKIHLYNAELEALHQQI 214 *************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.188 | 113 | 214 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-36 | 114 | 211 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MEDRSSERRK GKGREARSLF DSHPPSYRPS YPYDDADAEA EAPDLAGSRA RASRVTMSSS 60 SSFSSKPPPH LLHVDTTATT NGSAASPGSA SSSQSSRSSP RPSPAAGGSG QNQACAACKY 120 QRRKCNPDCS LAPYFPAENQ RLFLNAHRLF GVRNIQKTLQ RISPEYGPEA MRALIYQSEA 180 RAADPVYGCV GIIKNLEHKI HLYNAELEAL HQQIAIYRQA ATAVGGGGHP LAAGPPMLAA 240 APGQNNLAMT MHALYGGGGV HLQEPVHQAG AAGFAVVADQ QAGYNALNHV NVDDHGQDQH 300 QQQPHPLYDY FCYDGTPAEE ATSHDATMRH EFCYSDASAT QTGSSSGGMT TLREQLENHC 360 QIQAAPFVDA FDDVKPHGLP VMTEHHSQAH GGGGGIIEQP EQKVLPATAV VKYDDADQNM 420 ADDEPAAPAA GQCHLELGSS SFLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-28 | 110 | 226 | 7 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-28 | 110 | 226 | 7 | 121 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05911A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005388 | 4e-40 | AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04. | |||
GenBank | AP014964 | 4e-40 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 4e-40 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2S3GZ98 | 3e-82 | A0A2S3GZ98_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba02946.1.p | 4e-78 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-37 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05911A |