PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05853A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 405aa    MW: 44303 Da    PI: 8.5794
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05853AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392.1e-1252108155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  s+n  ++k+   g ++ ++ Aa+a++ a++k++g
  Oropetium_20150105_05853A  52 SVYRGVTRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEDAAARAYDLAALKYWG 108
                                78*******************8888888775555599***99*************98 PP
2AP2521.7e-16158209155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Oropetium_20150105_05853A 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 209
                                89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1452118IPR016177DNA-binding domain
PfamPF008471.2E-852108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1253118IPR001471AP2/ERF domain
SMARTSM003809.8E-1953122IPR001471AP2/ERF domain
PROSITE profilePS5103218.83453116IPR001471AP2/ERF domain
PRINTSPR003675.0E-65465IPR001471AP2/ERF domain
CDDcd000184.94E-23158219No hitNo description
SuperFamilySSF541717.19E-18158219IPR016177DNA-binding domain
PfamPF008471.7E-12158209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-18159218IPR001471AP2/ERF domain
PROSITE profilePS5103218.36159217IPR001471AP2/ERF domain
SMARTSM003801.7E-25159223IPR001471AP2/ERF domain
PRINTSPR003675.0E-6199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAKPRKNSAA AAAAANNNNN TSSAAVGEVG VRVKPKRTRK SVPRESPSQR SSVYRGVTRH  60
RWTGRFEAHL WDKNSWNESQ NKKGKQGAYD DEDAAARAYD LAALKYWGPD TILNFPASAY  120
EEELKEMEGQ SREEYIGSLR RSMKFIRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY ATQEEAAMAY DMAAIEYRGL NAVTNFDLSR YIKWLRPGAD GAAAAVAAQN  240
PHPMLGGLAH ELPQVDLDGA AFQHDQQHNQ GADETHFPLP PRTSLGHTPT TSALSLLLQS  300
PKFKEMIALQ VAAESSTTTS SSSPPTPSPP RSSPSPPPPQ ELLQAQVAND GGGASPQCSF  360
PDDIQTFFGC EDVGVGVGYA DVDGMFFGXX XXXXXXXFHF ELDL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05853A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396321e-118BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551111e-118BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275881e-118KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799408.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN42e-97AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9XDW00.0A0A0D9XDW0_9ORYZ; Uncharacterized protein
STRINGLPERR09G07570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-90ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]