PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05831A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 38070.9 Da PI: 6.5857 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.8e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W ++++g++R++k+c++rw++yl Oropetium_20150105_05831A 14 KGPWSAEEDAVLKAYIEEHGTGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3.1e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd + + G++ W+tIa+ ++ gRt++++k++w++ Oropetium_20150105_05831A 69 GGFTKEEDNVICSLYISVGSR-WSTIAAQLP-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.57 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.39E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.033 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGRAPCCDKA TVKKGPWSAE EDAVLKAYIE EHGTGGNWIQ LPHKIGLNRC GKSCRLRWLN 60 YLRPNIRHGG FTKEEDNVIC SLYISVGSRW STIAAQLPGR TDNDVKNHWN TKLKRRLLGS 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LERMQLGMRL HRRHDRLESR PGAFTLYNYG 180 SSSSSSLWPS PSLSPSPSPA ASDCSEMQLR QLPVASSTGC WSHMQSTFSY ACSGAHETLD 240 GTCTPQMSTT TVTGETAAVG MESSSSTPTA SSASATFGSM EDEIDMLLRQ IQSFEEDGQT 300 TDGVDRCFGA VDHVTLDGST GSWSSCSTPG VDSVFQDFVQ GYNQYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05831A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063260 | 1e-121 | BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802913.1 | 1e-145 | transcription factor MYB36-like | ||||
TrEMBL | A0A3L6T850 | 1e-149 | A0A3L6T850_PANMI; Transcription factor MYB35-like | ||||
STRING | Pavir.Aa03183.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13265 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 2e-71 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05831A |