PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05814A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | ERF | ||||||||
Protein Properties | Length: 399aa MW: 43404.1 Da PI: 6.5736 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9e-20 | 138 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ t+eeAa+a++a ++k++g Oropetium_20150105_05814A 138 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTPEEAARAYDAEARKIRG 187 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-22 | 138 | 196 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 138 | 196 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 138 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-37 | 138 | 201 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-31 | 138 | 196 | No hit | No description |
Pfam | PF00847 | 2.9E-12 | 139 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-11 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-11 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MCGGAILSGF IRPSSGAAAA AAKKKQQQSR RVTADLLWPR LGKRKEEEDF EADFREFEQG 60 LSXXXXXXXX XXXXXXXXXX XXXXLPAVKS APEWSVFGAT AKAPPGVARS TVDDVITPKS 120 AQHDGPAINS TKRSRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT PEEAARAYDA 180 EARKIRGKKA KVNFPDEGLN GQQSILKQTK LASPSKNCAD EAFGHASNGD NDLFAMFAFN 240 DTKVPVKPAE TAAFLPPMKP PMPIEGFGTK VLSDQSSNSY GSSDFGWDDE TMTSDYTSVF 300 APSNAVPAYV ETAYLQNGPS KRMRNNYGVA VPRGNGVPNL TQDMPGFDAE TKYLPLPFVD 360 SSSDVSMDSL LQNDVTQDGA SNGDLWSLDE LLMAAGAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 138 | 195 | 5 | 63 | ATERF1 |
3gcc_A | 3e-19 | 138 | 195 | 5 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05814A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956913.1 | 1e-168 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0A9P810 | 0.0 | A0A0A9P810_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J01991.1.p | 1e-169 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11200 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-29 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05814A |