PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05814A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 399aa    MW: 43404.1 Da    PI: 6.5736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05814AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-20138187255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+G+r+++ +g+W+AeIrdps+     r++lg++ t+eeAa+a++a ++k++g
  Oropetium_20150105_05814A 138 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTPEEAARAYDAEARKIRG 187
                                69*******.**********965...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-22138196IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-32138196IPR001471AP2/ERF domain
PROSITE profilePS5103223.788138195IPR001471AP2/ERF domain
SMARTSM003804.5E-37138201IPR001471AP2/ERF domain
CDDcd000182.02E-31138196No hitNo description
PfamPF008472.9E-12139187IPR001471AP2/ERF domain
PRINTSPR003677.7E-11139150IPR001471AP2/ERF domain
PRINTSPR003677.7E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MCGGAILSGF IRPSSGAAAA AAKKKQQQSR RVTADLLWPR LGKRKEEEDF EADFREFEQG  60
LSXXXXXXXX XXXXXXXXXX XXXXLPAVKS APEWSVFGAT AKAPPGVARS TVDDVITPKS  120
AQHDGPAINS TKRSRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT PEEAARAYDA  180
EARKIRGKKA KVNFPDEGLN GQQSILKQTK LASPSKNCAD EAFGHASNGD NDLFAMFAFN  240
DTKVPVKPAE TAAFLPPMKP PMPIEGFGTK VLSDQSSNSY GSSDFGWDDE TMTSDYTSVF  300
APSNAVPAYV ETAYLQNGPS KRMRNNYGVA VPRGNGVPNL TQDMPGFDAE TKYLPLPFVD  360
SSSDVSMDSL LQNDVTQDGA SNGDLWSLDE LLMAAGAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19138195563ATERF1
3gcc_A3e-19138195563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05814A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956913.11e-168ethylene-responsive transcription factor 1
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-29related to AP2 12