PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05733A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 362aa    MW: 38220.1 Da    PI: 8.4873
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05733AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-17185239256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Oropetium_20150105_05733A 185 RKKLRLSKEQSAFLEESFKEQATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 239
                                788899***********************************************98 PP
2HD-ZIP_I/II124.84.1e-40185275192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke 
  Oropetium_20150105_05733A 185 RKKLRLSKEQSAFLEESFKEQATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEL 268
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                +eLr +lk
  Oropetium_20150105_05733A 269 AELR-ALK 275
                                ***9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-17171235IPR009057Homeodomain-like
SuperFamilySSF466893.72E-18177242IPR009057Homeodomain-like
PROSITE profilePS5007117.07181241IPR001356Homeobox domain
SMARTSM003892.0E-15183245IPR001356Homeobox domain
CDDcd000861.23E-16185242No hitNo description
PfamPF000466.0E-15185239IPR001356Homeobox domain
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
PfamPF021831.4E-10241275IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-23241284IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MELGLSLGDT MADAGRDLVL GLGMGMGVVR REDEGGERRS KRGRDEAAAS VSLDLEFGAE  60
RRGRSSPEPP VRLSLLSMVP GLGVPWPSHD SGESFRPGHL EASTRGFDVN RTPSCVDAGA  120
GAXXXXXXXX XXXAGAGGAA AAVSSSPNNS AGSFPTDFSA RGQAGAAADR ACSRASDEDD  180
GGSSRKKLRL SKEQSAFLEE SFKEQATLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL  240
KQTEVDCEYL KRCCETLTEE NRRLQKELAE LRALKTVNPY YMRLPATTLS MCPSCERVAS  300
NSSAPPATIT ATPAPGSAAP APSAGGIGDA APEQRPSSFA ALFSSPLNRP LAAQPQAPAS  360
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189SRKKLRL
2233241RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05733A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364470.0BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269110.0KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802237.11e-134homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-129HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A1E5V7401e-136A0A1E5V740_9POAL; Homeobox-leucine zipper protein HOX11
STRINGPavir.J20342.1.p1e-132(Panicum virgatum)
STRINGSb02g026150.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-58homeobox from Arabidopsis thaliana