PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05727A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 485aa MW: 51842.8 Da PI: 8.9062 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.7e-06 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Oropetium_20150105_05727A 69 YVCEICGQGFQRDQNLQMHRRRH 91 9*********************9 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00042 | 148 | 169 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ Oropetium_20150105_05727A 148 ACERCSKAYAVHSDYKAHLKTC 169 6*******************98 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0015 | 177 | 195 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Oropetium_20150105_05727A 177 DCGRVFSRVESFIEHQDTC 195 9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.05E-6 | 68 | 91 | No hit | No description |
SMART | SM00355 | 0.0032 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 138 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.05E-6 | 142 | 167 | No hit | No description |
SMART | SM00355 | 130 | 147 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009590 | Biological Process | detection of gravity | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010031 | Biological Process | circumnutation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MLGFCSPAAG SPPDEAMPEP FRSLEIATTA AATTATATTK KKRRPAGTPD PDAEVVSLSP 60 RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH 120 HDPAHALGDL VGIKKHFRRK HSGHRQWACE RCSKAYAVHS DYKAHLKTCG TRGHSCDCGR 180 VFSRVESFIE HQDTCNAGRT RADLSPACGG VAAAGSLQQA PAPAASLSRT ASSTSPSSDV 240 VISQAAWPGP AAMPSSTAAF HRFDQVXXXX XXXXXXXGGH NLELQLMPPS SRSVGTTAAF 300 CRSPRSPAVS SQGNDAAMHL ALSIGGVSGC AADERGCGVL LAAGRANGDE AREQLRQALA 360 EKAAADEARA QAKRHAELAE QELASAKRMR RQAQVELSRA HALREHAVRQ VNATLLQITC 420 LSCRHKFRAR PVPTAGAMSG AEVACSYDVS SVVTEGGDAE VNEPFFGADG GMRRRQAAKL 480 MDVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-17 | 143 | 197 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 3e-17 | 143 | 197 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 43 | KKKRR |
2 | 39 | 44 | KKKRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00254 | DAP | Transfer from AT2G01940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05727A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369631 | 0.0 | AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03. | |||
GenBank | AK373595 | 0.0 | AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803598.1 | 0.0 | protein indeterminate-domain 16-like | ||||
Swissprot | F4IPE3 | 1e-130 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A3L6QUU4 | 0.0 | A0A3L6QUU4_PANMI; Protein indeterminate-domain 16-like | ||||
STRING | Pavir.Ba02057.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-106 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05727A |
Publications ? help Back to Top | |||
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