PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05716A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GeBP
Protein Properties Length: 326aa    MW: 36269.1 Da    PI: 9.9249
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05716AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573933.2e-293100297
                     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 
                                +++rlws  De+v+L+Gl  +++k+g+   +++di +++  + +++s+kv+++ql++K+rrLK+K++   +++k+g++p+f ++
  Oropetium_20150105_05716A   3 KPSRLWSLGDELVILRGLAAYRTKRGVlpASVHDIGKLHGHIVNELSIKVTTTQLSDKVRRLKQKYHLLATRTKNGRDPDFPTA 86 
                                689************************777778*************************************************** PP

                     DUF573  84 hdqkifelskkiWg 97 
                                hd+++++l kk+Wg
  Oropetium_20150105_05716A  87 HDHSVYDLGKKVWG 100
                                *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-265100IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
LKKPSRLWSL GDELVILRGL AAYRTKRGVL PASVHDIGKL HGHIVNELSI KVTTTQLSDK  60
VRRLKQKYHL LATRTKNGRD PDFPTAHDHS VYDLGKKVWG AIGGAGAGAG GGSAIVEYEN  120
AGGAGDSDDD RQSGESDGDM DSGREERDRK NKRLKPIAMA NGNETRFGAM TTSGRGKVDL  180
EKGKDAYPYL WETVEDLSRQ HPNGVAFKKA FEMIEGSKAR RMEEKLRKFR VTEVRHQLRR  240
MELMKETVKM VLDALEGCSV VNGYRLSFVL QSSDIEQGEH KSSAMTHSSI REEGKQPGSD  300
LKDWRDATAM ALGFLYMFLK SKYHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05716A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460312.11e-125STOREKEEPER protein
TrEMBLA0A2T7ESZ31e-126A0A2T7ESZ3_9POAL; Uncharacterized protein
STRINGSb02g026310.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.15e-13DNA-binding storekeeper protein-related transcriptional regulator