PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05686A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 338aa    MW: 35626.3 Da    PI: 10.0926
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05686AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.65.4e-13282315437
                                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvke 37 
                                ++r+rr++kNRe+A rsR+RK+a++ eLe +v e
  Oropetium_20150105_05686A 282 DRRQRRMIKNRESAARSRARKQAYTMELEAEVPE 315
                                68****************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-4279335IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.933281319IPR004827Basic-leucine zipper domain
PfamPF001701.4E-10283315IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.1E-12283316No hitNo description
SuperFamilySSF579598.04E-9283318No hitNo description
CDDcd147071.80E-18283319No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEFKNGGSSS SSQRRHQEGA PLARQGSSVY SLTFDEFQSA LGGAAAGAGG VGGVGKDFGS  60
MNMDELLRNI WTAEETQAMA SASTAGLEAP PLQRQGSSLT LPGSLSAKTV DEVWRNLVRD  120
EPQQDGAPGG GQGQQTQQRQ STLGEMTLEE FLVKAGVVRE NNPAAHALPP MPPPRPVPVA  180
PKSAAFFGNF PGTDDAAAAA ALGFAPVGGM GNLAMGNVLM PRAAAGMGMG GGALAVQTAM  240
NQLDSGGKGY SDLSSPIEPL PYSFEGLIRR RRNVGGVEKV VDRRQRRMIK NRESAARSRA  300
RKQAYTMELE AEVPEMLKDP FGRKKRVCLR RTLTGPW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05686A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310056.11e-144bZIP transcription factor TRAB1
SwissprotQ6ZDF32e-94TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLC5X2A71e-143C5X2A7_SORBI; Uncharacterized protein
STRINGPavir.Ba02029.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.25e-33abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]