PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05617A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 270aa    MW: 29214 Da    PI: 4.7337
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05617AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-194699356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Oropetium_20150105_05617A 46 KKRRLSAEQVRALERSFEVENKLEPERKTRLARDLGLQPRQVAVWFQNRRARWK 99
                               45689************************************************9 PP
2HD-ZIP_I/II133.48.1e-4345137193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L +++
  Oropetium_20150105_05617A  45 EKKRRLSAEQVRALERSFEVENKLEPERKTRLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRHDHDALCRDK 128
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                ++L +e+ke
  Oropetium_20150105_05617A 129 DALLAEIKE 137
                                ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-2034103IPR009057Homeodomain-like
SMARTSM003891.9E-1844105IPR001356Homeobox domain
PROSITE profilePS5007117.18445101IPR001356Homeobox domain
PfamPF000462.0E-164699IPR001356Homeobox domain
CDDcd000867.90E-1846102No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2047108IPR009057Homeodomain-like
PRINTSPR000311.9E-57281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000311.9E-58197IPR000047Helix-turn-helix motif
PfamPF021839.3E-17101142IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKRPRGSSPS LLPVTNPDVD DGYGGAGXXX XXXXXXXMLA CGGGEKKRRL SAEQVRALER  60
SFEVENKLEP ERKTRLARDL GLQPRQVAVW FQNRRARWKT KQLERDYAAL RQSYDALRHD  120
HDALCRDKDA LLAEIKELKA KLGDEEAAAS FTSVKAEPAA SDGPPLAGAG SSESDSSAVL  180
NDTDAAGATP LIEAPVPEIQ GSTLLLGSGT ATAGPAAARH GEVFFHGSFL KVEEDETGFL  240
DEDEPCGGFF AVEQPPSIAW WTEPTEHWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05617A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342570.0BT034257.1 Zea mays full-length cDNA clone ZM_BFc0009H14 mRNA, complete cds.
GenBankBT0390620.0BT039062.1 Zea mays full-length cDNA clone ZM_BFb0367N11 mRNA, complete cds.
GenBankBT0553740.0BT055374.1 Zea mays full-length cDNA clone ZM_BFb0091J03 mRNA, complete cds.
GenBankEU9482460.0EU948246.1 Zea mays clone 371798 mRNA sequence.
GenBankJX4699290.0JX469929.1 Zea mays subsp. mays clone UT3187 HB-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957072.11e-148homeobox-leucine zipper protein HOX4
SwissprotQ6K4981e-117HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-117HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLK3ZW401e-146K3ZW40_SETIT; Uncharacterized protein
STRINGSi030822m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-40homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]