PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05613A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 720aa MW: 78041.9 Da PI: 4.6626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05613A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	93	115	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+ +F+++ +++H+ + H Oropetium_20150105_05613A 93 ECQKCNLTFNDQGAYVQHQLSfH 115 5******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	94	115	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MGPKGHQFAT CKEVSSYLMS VLGYPEAKLT AIHSNNATVQ GLNSVNSVDL QQKTSPTEEK 60 QIAMPVTLFS HSGDTHHQKL QKDETRMGES AKECQKCNLT FNDQGAYVQH QLSFHQRRAK 120 RRRVSKANEL GIGMDGKFET LECQKTSKEG PDNFGHCLAD VSYQGQSATN KFHGSFSGDL 180 GGKSSVVPAE YGLQPMTALP QRETEPYAQE SNTASLAVEA GSKFSTCNSA NIHENDSSKK 240 IECPIRDCSQ ISCNIPKEVF PTADGPDETK CTDDPAGCAD KTQSKQVSEP YDLLHGNFGS 300 SHEENNSNNQ LKSKSLSVAC DEHDLNSVDM EVDGANLACN AVHPPNIKNE KSVDDKTMDS 360 EMISLKNGEI KNRIRDVNLN SLDTISSPVS GGNYDTSSCI DDATRSSIIA QCFGTSSNDD 420 NACKDENLAN QNRSSKGETF VNQKNDMLYQ SNLTMAPTPP AQINVDCFTS EIKSYGNRSE 480 DNGKEALVKN MMSHETGFDV EAYNNDIFNG TITESSLAQL NNAINMKNDF ANCYSLSDLN 540 TLTGGTATDE IDIHGMRNSF VGSTSREEPN ENCTLDFDIK GSMLEALEKS DSDLENQYSG 600 AGPTCDSLPT TGTSGNIDDF MSMQSNFGSF TSLVRAVEDV PLSRIIQDQC DLQLGFGGPK 660 QPMYPSFEQQ LRMASAGAPP YGSMSRHQSI PQQADSLGYI CPSCKGKFSG HLGINGPSI*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MGPKGHQFAT CKEVSSYLMS VLGYPEAKLT AIHSNNATVQ GLNSVNSVDL QQKTSPTEEK  60
QIAMPVTLFS HSGDTHHQKL QKDETRMGES AKECQKCNLT FNDQGAYVQH QLSFHQRRAK  120
RRRVSKANEL GIGMDGKFET LECQKTSKEG PDNFGHCLAD VSYQGQSATN KFHGSFSGDL  180
GGKSSVVPAE YGLQPMTALP QRETEPYAQE SNTASLAVEA GSKFSTCNSA NIHENDSSKK  240
IECPIRDCSQ ISCNIPKEVF PTADGPDETK CTDDPAGCAD KTQSKQVSEP YDLLHGNFGS  300
SHEENNSNNQ LKSKSLSVAC DEHDLNSVDM EVDGANLACN AVHPPNIKNE KSVDDKTMDS  360
EMISLKNGEI KNRIRDVNLN SLDTISSPVS GGNYDTSSCI DDATRSSIIA QCFGTSSNDD  420
NACKDENLAN QNRSSKGETF VNQKNDMLYQ SNLTMAPTPP AQINVDCFTS EIKSYGNRSE  480
DNGKEALVKN MMSHETGFDV EAYNNDIFNG TITESSLAQL NNAINMKNDF ANCYSLSDLN  540
TLTGGTATDE IDIHGMRNSF VGSTSREEPN ENCTLDFDIK GSMLEALEKS DSDLENQYSG  600
AGPTCDSLPT TGTSGNIDDF MSMQSNFGSF TSLVRAVEDV PLSRIIQDQC DLQLGFGGPK  660
QPMYPSFEQQ LRMASAGAPP YGSMSRHQSI PQQADSLGYI CPSCKGKFSG HLGINGPSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	122	QRRAKRRR
2	119	123	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_05613A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611640.1	0.0	uncharacterized protein LOC4347347
TrEMBL	A0A0E0M2C1	0.0	A0A0E0M2C1_ORYPU; Uncharacterized protein
STRING	OPUNC09G12080.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2687	14	19

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05613A