PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05526A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 395aa    MW: 44093 Da    PI: 7.5808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05526AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05231250120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++Cp C k+F+r  n++ H+
  Oropetium_20150105_05526A 231 FSCPVCFKTFNRYNNMQMHM 250
                                89*****************9 PP
2zf-C2H211.10.0012317337323
                                ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                C  Cgk F  k + ++H +++
  Oropetium_20150105_05526A 317 CRRCGKAFAVKGDWRTHEKNC 337
                                *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64231258IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-6231250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-6297335No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5302335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538315335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MNHYNNNHHR YYYQTATQLA PAPPPPPPAA AAYSRPFFLT PPAAPTTPHA PPSPPLREPL  60
PLLSLAPSSR EEEQRSRTEA DSDEDEEEDE EANPASSNNN HGQRRVIRGF FADLNSKXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG LADLASGLSS RPRPQQGDGV HQEGDDERRN  180
ERENGGAGEE EEEEAAAAPL GFPSTPMIGR LNKGQYWIPT PSQILIGPTQ FSCPVCFKTF  240
NRYNNMQMHM WGHGSQYRKG PESLRGVQPT AMLRLPCYCC APGCRNNIDH PRAKPLKDFR  300
TLQTHYKRKH GLKPFLCRRC GKAFAVKGDW RTHEKNCGRL WYCACGSEFK HKRSLKDHAR  360
AFGNGHGAVG GGLDEDDYDG AVSDVEHEAS HRSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05526A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696610.0EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799833.11e-131zinc finger protein WIP2-like
TrEMBLA0A3B6LP541e-134A0A3B6LP54_WHEAT; Uncharacterized protein
TrEMBLA0A446UDH71e-134A0A446UDH7_TRITD; Uncharacterized protein
STRINGTraes_5BL_6888AE9CB.11e-134(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein