PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05479A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 579aa    MW: 62590.9 Da    PI: 4.2921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05479AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.78.4e-141058250
                        NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..k 50
                               ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp+  +
  Oropetium_20150105_05479A 10 PPGFRFSPTDEELVLYFLKRRIASGRDTP--YIADVDVYKSHPSHLPErsA 58
                               8*********************9999444..6**************95233 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-22797IPR003441NAC domain
PROSITE profilePS5100510.1449211IPR003441NAC domain
PfamPF023657.3E-91095IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MENPPPRRWP PGFRFSPTDE ELVLYFLKRR IASGRDTPYI ADVDVYKSHP SHLPERSALQ  60
TGDRQCGGSS GRPVGNKKTL VYHHGRAPRG ERTDWGLPAG AVAHPVAATT TCAATEEEQA  120
DHLLPIGELE ELLSEFGNDQ EQVEVQDFCT SASSQSQHQH GDGQGWLNES AHMSQVVDVP  180
TGSDAVPATE NTCADLPLGD MEELLMRISD DQQHVELFSD FSTSVPELQL QCDDNQVWLD  240
TNRGEEVGAA GPTTSSVAAV VGVLPDGDLA GTRSCIIQES TDLGPQTGTS CQISESNLTN  300
VPFCGETNSG EETSSSRCVS SLMNYNSQDA DESEFLEIND FFDVEDVEQI MNSTETERLI  360
SATYGMFDSL EYSDASLFLP EPFNAAGVVA ENQFVNLVNS GIENQGYQYT TEVKTHNQVA  420
HNVQSHTEHN LVVLSSHTSG TMNLHTASEP PNQGPNASRS WFNAALSALL DSVPSSPAIA  480
AEIENTVINK TLQRISSFRS QQAANEGSTV IYRTVQRISS FKSHQAASEE PGIPVIKATR  540
GGRLVFVALL VLLAAIIWTV ITGPAVNFCT GLWKSSST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05479A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802095.10.0NAC domain-containing protein 82-like
TrEMBLA0A2T7EU370.0A0A2T7EU37_9POAL; Uncharacterized protein
STRINGPavir.J04800.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.15e-16NAC domain containing protein 17