PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_05479A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 579aa MW: 62590.9 Da PI: 4.2921 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43.7 | 8.4e-14 | 10 | 58 | 2 | 50 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..k 50 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ + Oropetium_20150105_05479A 10 PPGFRFSPTDEELVLYFLKRRIASGRDTP--YIADVDVYKSHPSHLPErsA 58 8*********************9999444..6**************95233 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-22 | 7 | 97 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.144 | 9 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-9 | 10 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 579 aa Download sequence Send to blast |
MENPPPRRWP PGFRFSPTDE ELVLYFLKRR IASGRDTPYI ADVDVYKSHP SHLPERSALQ 60 TGDRQCGGSS GRPVGNKKTL VYHHGRAPRG ERTDWGLPAG AVAHPVAATT TCAATEEEQA 120 DHLLPIGELE ELLSEFGNDQ EQVEVQDFCT SASSQSQHQH GDGQGWLNES AHMSQVVDVP 180 TGSDAVPATE NTCADLPLGD MEELLMRISD DQQHVELFSD FSTSVPELQL QCDDNQVWLD 240 TNRGEEVGAA GPTTSSVAAV VGVLPDGDLA GTRSCIIQES TDLGPQTGTS CQISESNLTN 300 VPFCGETNSG EETSSSRCVS SLMNYNSQDA DESEFLEIND FFDVEDVEQI MNSTETERLI 360 SATYGMFDSL EYSDASLFLP EPFNAAGVVA ENQFVNLVNS GIENQGYQYT TEVKTHNQVA 420 HNVQSHTEHN LVVLSSHTSG TMNLHTASEP PNQGPNASRS WFNAALSALL DSVPSSPAIA 480 AEIENTVINK TLQRISSFRS QQAANEGSTV IYRTVQRISS FKSHQAASEE PGIPVIKATR 540 GGRLVFVALL VLLAAIIWTV ITGPAVNFCT GLWKSSST* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_05479A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802095.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A2T7EU37 | 0.0 | A0A2T7EU37_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04800.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34190.1 | 5e-16 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_05479A |