PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05393A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 191aa    MW: 20779.2 Da    PI: 10.2769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05393AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-2062112155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++g
  Oropetium_20150105_05393A  62 CGFRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYG 112
                                79*****999.**********8...2.489***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-2962120No hitNo description
PfamPF008471.8E-1362112IPR001471AP2/ERF domain
PROSITE profilePS5103222.24763120IPR001471AP2/ERF domain
SMARTSM003801.8E-3363126IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2163121IPR016177DNA-binding domain
PRINTSPR003671.6E-106475IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3264121IPR001471AP2/ERF domain
PRINTSPR003671.6E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
KKRPRRSRDG PNSVTAVIQR WAQINQEREH DPEAAKRPRK APAKGSKKGC MKGKGGPENT  60
VCGFRGVRQR TWGKWVAEIR EPNRVNRLWL GTFPTAEDAA RAYDEAARAM YGALARTNFP  120
SQPALAQVGP AAAEGVQQVS MSCESTTTSN HSDSVSMHKP GVSDISSSLN TGSEDLTILP  180
HEPKTESATL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1664120663ATERF1
3gcc_A7e-1664120663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05393A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302431.12e-81dehydration-responsive element-binding protein 2B-like isoform X1
RefseqXP_021302432.11e-81dehydration-responsive element-binding protein 2B-like isoform X2
RefseqXP_021302434.15e-82dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotA2WL196e-51DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A1N7TB588e-93A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRINGTRIUR3_17409-P18e-82(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-28DRE-binding protein 2A