PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05284A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | GRAS | ||||||||
Protein Properties | Length: 152aa MW: 16214.5 Da PI: 7.0593 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 35.9 | 1.1e-11 | 87 | 149 | 281 | 343 |
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 +r+ Er+ l+ e+++vv+ eg rrerhe+ W r++ aGF+p+p+s ++ ++a +l ++ Oropetium_20150105_05284A 87 DRAAAERVHLRGEVMDVVTGEGMLRRERHERWVCWALRMHVAGFEPAPMSGSVFNKAVSLAQQ 149 68899***************************************************9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.202 | 1 | 151 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.7E-9 | 87 | 149 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MTSEESSNKG KTAVVIKEEP SPVDAECPQV KKVKKSPPSG APIEQPVAEG ATAPAVATAP 60 AVASPAHIVI FGPQQQHAEG DPGRFVDRAA AERVHLRGEV MDVVTGEGML RRERHERWVC 120 WALRMHVAGF EPAPMSGSVF NKAVSLAQQM W* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05284A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 2e-08 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05284A |