PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05283A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | GRAS | ||||||||
Protein Properties | Length: 160aa MW: 18527.4 Da PI: 8.9877 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 92 | 9.7e-29 | 4 | 152 | 224 | 374 |
GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 +++L+++++l+Pk++v++e+eadhn + + +r+++a++yy++lf +e+ + + +++++++++v+ eg rre Oropetium_20150105_05283A 4 AHALLHVLRDLKPKLLVLTEHEADHNCAVLSDRVVNAFDYYAVLFRDFEEVA-------EIDPKPVFKEQVMDIVTYEGLLRRE 80 4689*****************************************9998882.......33345679999************** PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg....yrve.eesgslvlgWkdrpLvsvSaWr 374 rhe++++W r+++aGF+p+++s +a k+ k + ++++ + + + ++g l+l+ ++ p++svSaWr Oropetium_20150105_05283A 81 RHEKMARWVPRMQQAGFEPAKVSADAFKETKKMTQQFSAHAklwsFDAHkVKDGYLLLYSRKVPIFSVSAWR 152 *************************************94432333333334588899999999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.609 | 1 | 127 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-26 | 4 | 152 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTQAHALLHV LRDLKPKLLV LTEHEADHNC AVLSDRVVNA FDYYAVLFRD FEEVAEIDPK 60 PVFKEQVMDI VTYEGLLRRE RHEKMARWVP RMQQAGFEPA KVSADAFKET KKMTQQFSAH 120 AKLWSFDAHK VKDGYLLLYS RKVPIFSVSA WRPVQNTPQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05283A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020395710.2 | 3e-39 | scarecrow-like protein 3 | ||||
TrEMBL | A0A1D6M1N2 | 6e-38 | A0A1D6M1N2_MAIZE; Scarecrow-like protein 3 | ||||
TrEMBL | K7UJ49 | 7e-38 | K7UJ49_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | GRMZM5G889326_P01 | 1e-38 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13716 | 13 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 4e-23 | RGA-like protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05283A |