PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05214A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 476aa    MW: 52322.1 Da    PI: 9.2606
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05214AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.5e-13141197155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a+++++g
  Oropetium_20150105_05214A 141 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALRYWG 197
                                57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-8141197IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-14141207IPR016177DNA-binding domain
PROSITE profilePS5103218.189142205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-12142206IPR001471AP2/ERF domain
SMARTSM003806.6E-18142211IPR001471AP2/ERF domain
PRINTSPR003676.3E-5143154IPR001471AP2/ERF domain
PRINTSPR003676.3E-5187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNKLGTRVGR LDSLHPSTGL FSTYAPFAAR GNDDGTVRIR SAPRVPLSLS RARGGLPGCP  60
VPIASLNSSM PASSDTPAGP WRLSPRALGP LGEPFFAAGT AAEEQQQQTP RRTLAVRKDR  120
ACTAKERISR MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD  180
EEAAARAYDL AALRYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFSRGLP  240
KCGGLPRQLY SSRWDSSFGH LLGSDCMNLG YGKDVTLDGK FTASFGLERK IDLTNYIRWW  300
LPKKTRQSDT QKADELSDEI CAIENSMQPT EPYKLPSLGL CSYSKPGSVG LSACSILSQS  360
DAFKNFLEKS TKLSEECTLS KEMVQGKDIA SVPATGHDTT AVNMNMNELL AQRAPYTMAT  420
IPMKTTWSPA DPSVDTLFWS NFILPSSQPV TMATITTTTF AKNEVTSSDP FQSQE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05214A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962201.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK22e-91AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3Z5Y40.0K3Z5Y4_SETIT; Uncharacterized protein
STRINGSi021952m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-85AP2 family protein