PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05080A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 26329.5 Da PI: 7.8541 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.8 | 3.8e-43 | 18 | 115 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq Oropetium_20150105_05080A 18 PCAACKFLRRKCQPDCVFAPYFPPDNPHKFVQVHRVFGASNVTKILNELQPCQREDAVNSLAYEADMRLRDPVYGCVGVISILQ 101 7*********************************************************************************** PP DUF260 85 qqleqlkaelallk 98 ++l+ql++el+++ Oropetium_20150105_05080A 102 HRLRQLQQELDHAS 115 *********98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.984 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-43 | 18 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MITVTSPTSG GGGGAGSPCA ACKFLRRKCQ PDCVFAPYFP PDNPHKFVQV HRVFGASNVT 60 KILNELQPCQ REDAVNSLAY EADMRLRDPV YGCVGVISIL QHRLRQLQQE LDHASFELSK 120 YQQVAAAAAA VVSSGGPAPL TGFAGNMLPD STQNIMNTGH QSMAAAIGGS AGFMQHDNFA 180 TVQMLARSYD GEAATARVVG VNGGGSYEFG SSSALGGEHS GRLGQTSGAP FLKPGTARRD 240 GQSTSAQSMS SGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-54 | 14 | 121 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-54 | 14 | 121 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05080A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962077.1 | 1e-101 | LOB domain-containing protein 6 | ||||
Refseq | XP_004962078.1 | 1e-101 | LOB domain-containing protein 6 | ||||
Refseq | XP_004962079.1 | 1e-101 | LOB domain-containing protein 6 | ||||
Refseq | XP_012700131.1 | 1e-101 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 3e-97 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | K3ZC40 | 1e-100 | K3ZC40_SETIT; Uncharacterized protein | ||||
STRING | Si024114m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 5e-49 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05080A |