PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05058A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 35641.2 Da PI: 8.8589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.5 | 3.7e-51 | 25 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv++yL+++++g ++++ +i+e+d+yk++PwdLp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWk Oropetium_20150105_05058A 25 LPPGFRFHPTDEELVMHYLCRRCAGLPISV-PIIAEIDLYKYDPWDLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWK 107 79****************************.88***************7666789***************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg dk+v + + v +kk Lvfy g+apkg kt+W+mheyrl Oropetium_20150105_05058A 108 ATGADKPVGT--PKPVAIKKALVFYAGKAPKGDKTNWIMHEYRL 149 ********98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-61 | 20 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.459 | 25 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-26 | 26 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSGGTRGPAA AAAAAQGQTH EELQLPPGFR FHPTDEELVM HYLCRRCAGL PISVPIIAEI 60 DLYKYDPWDL PRMALYGEKE WYFFSPRDRK YPNGSRPNRA AGTGYWKATG ADKPVGTPKP 120 VAIKKALVFY AGKAPKGDKT NWIMHEYRLA DVDRSAARKK NNSLRLDDWV LCRIYNKKSA 180 SERPAPAGWD HAASEQQHPA AAKAHSPPEQ KPSLLLPPGP GRTTACYAPP PFPELAAYHE 240 VRPTSDSVPR AHGTDSSCSG HATSAERPEV QSQPKIDEWE RTFASSAAAP GVNPAGSMLG 300 GPLGPAAGLS AGDPLFHDIL TYWGNKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-80 | 22 | 183 | 12 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05058A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376931 | 0.0 | AK376931.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001136644.1 | 1e-167 | uncharacterized protein LOC100216773 | ||||
Swissprot | Q7F2L3 | 1e-134 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | B4FJN5 | 1e-166 | B4FJN5_MAIZE; NAC domain containing protein 32 | ||||
STRING | GRMZM2G180328_P01 | 1e-167 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-118 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05058A |