PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05045A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 455aa    MW: 50329.2 Da    PI: 4.1455
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05045AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.7e-5061331128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lppGfrFhPtd elv++yLk+k+ gkkl + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nr+t +gy
  Oropetium_20150105_05045A   6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVELYKFPPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRTTPNGY 88 
                                79*************************988.89**************96347777888************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wk++gkd++++  +++ vglkktL+f++g+apkg +tdWvm ey++
  Oropetium_20150105_05045A  89 WKTSGKDRTIML-NSRIVGLKKTLIFHEGKAPKGDRTDWVMYEYKM 133
                                ************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-613156IPR003441NAC domain
PROSITE profilePS5100557.0646156IPR003441NAC domain
PfamPF023651.3E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VELYKFPPWD LPDKSCLRSR  60
DLEWFFFCPR DKKYPNGSRT NRTTPNGYWK TSGKDRTIML NSRIVGLKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDDSLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNENEWENAE  180
AETSMFHLMP ASEVVNPVED PHIEEAAPAG PASVLVNPVE DAHIEDAAPA GTMEQPILQD  240
SSAAANTCVE DMAFVDAVAG SDVQDGVVSE NNISDEVHNL CDPPEFDGFS LEDLSNFLDD  300
SPLPDNALGD NVVLPPMSEA EAYAFEMNTI DLYNELSGIA GFGDVPNSLH TGTDGIMERN  360
HTVLPADREL STDEFLELND LLAPDASFPN EFPAQSSQYF HNHNDVPALQ ASFESGVMHQ  420
TMPSIFEVCP PDYIGIAPQQ AAYLSDPSMQ YPFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-51215711169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05045A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660428.10.0NAC domain-containing protein 82
TrEMBLA0A368QI290.0A0A368QI29_SETIT; Uncharacterized protein
STRINGPavir.J07259.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.19e-82NAC domain containing protein 103