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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Oropetium_20150105_05025A | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family | MYB | ||||||||
| Protein Properties | Length: 264aa MW: 28712.5 Da PI: 8.705 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv ++k +G g+W++ ++ g+ R++k+c++rw +yl
Oropetium_20150105_05025A 14 KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
79******************************99************97 PP
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| 2 | Myb_DNA-binding | 56 | 8.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T eEdel+++++ lG++ W++Ia ++ gRt++++k++w+++
Oropetium_20150105_05025A 67 RGNFTDEEDELIIRLHSVLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 8.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 17.207 | 9 | 61 | IPR017930 | Myb domain |
| SMART | SM00717 | 4.7E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 6.11E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 9.97E-12 | 16 | 61 | No hit | No description |
| PROSITE profile | PS51294 | 28.354 | 62 | 116 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.1E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 8.16E-13 | 69 | 112 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0090378 | Biological Process | seed trichome elongation | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDEEDELIIR LHSVLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRPVG SVDSTAAVAA PRMTLLQPAN KLAAPRATLE SSSDDVGAGS TSTSNSSSGA 180 STRGAETPRC PDLNLDLFVG LPPPPPPPPA DTLTSHRPPV CLCYHLGLRA GEACGCHQVA 240 DSAATQRFST TTYFRPLEQG QYI* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 5e-30 | 14 | 116 | 7 | 108 | B-MYB |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Oropetium_20150105_05025A |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | EF372521 | 1e-151 | EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds. | |||
| GenBank | HF679428 | 1e-151 | HF679428.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB22 protein. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015638107.1 | 1e-118 | transcription factor MYB8 | ||||
| Swissprot | Q9SZP1 | 3e-93 | MYB4_ARATH; Transcription repressor MYB4 | ||||
| TrEMBL | A0A287G8K9 | 1e-119 | A0A287G8K9_HORVV; Uncharacterized protein | ||||
| TrEMBL | Q06944 | 1e-119 | Q06944_HORVU; MybHv5 | ||||
| STRING | MLOC_71041.1 | 1e-120 | (Hordeum vulgare) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP116 | 37 | 448 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38620.1 | 1e-93 | myb domain protein 4 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Oropetium_20150105_05025A |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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