PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04954A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 372aa    MW: 42101.1 Da    PI: 9.0038
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04954AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.5e-122048533
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee 33
                               k err+++NReAAr+sR+RKka++++Le+
  Oropetium_20150105_04954A 20 KMERRLAQNREAARKSRLRKKAYVQQLET 48
                               78*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.00313108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0251862IPR004827Basic-leucine zipper domain
PfamPF001701.4E-82048IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-82060No hitNo description
SuperFamilySSF579593.25E-72062No hitNo description
PROSITE patternPS0003602338IPR004827Basic-leucine zipper domain
PfamPF141445.8E-29101174IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLVQMKHGST RKEGKLLDGK MERRLAQNRE AARKSRLRKK AYVQQLETYR IRLQQIEQEL  60
HRPHSQGLFP GGCSRPGGDM SSGAIVFDME YTRWLDDESK HLTELLGALQ AQIIDANLGP  120
IVETCMRHYD ELFHLRAVLA RSDVFHLMTG TWATSAERCF LWMGGFRPSE ILKVSKKKKK  180
KHSSQITSII IGARLIHAES IFLSTVDDQM LIPQLDPLTD QQLLGMCNLR QSSEQAEEAL  240
VQGLQQLHQS LADAVGAGLL NDGANVANYT GLMALALDRL ESLESFYCQA DNLRQQALHH  300
MRRILTTRQT ARCFLSIGEY HRRLRALSSA WTSRPRESFI VTTESISPRI GTEQVAVHHH  360
QQQDQSQFSG F*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04954A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680636.10.0transcription factor TGAL5 isoform X4
RefseqXP_022680637.10.0transcription factor TGAL5 isoform X4
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A0A9IP070.0A0A0A9IP07_ARUDO; Uncharacterized protein
STRINGSi022106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-108bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]