PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_04889A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 596aa MW: 66010 Da PI: 7.682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av + g++Wk+Ia+ ++ +Rt+ qc +rwqk+l Oropetium_20150105_04889A 65 KGGWTPEEDENLRKAVSAFKGRHWKKIAEFVP-HRTEVQCLHRWQKVL 111 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.4e-18 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++vk++G++ W+ Ia+ + gR +kqc++rw+++l Oropetium_20150105_04889A 117 KGSWTQEEDDIIINLVKKHGPKKWSVIASSLD-GRIGKQCRERWHNHL 163 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 55.6 | 1.2e-17 | 169 | 212 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ Oropetium_20150105_04889A 169 KEAWTVEEEHVLANAHHVYGNK-WAEIAKLLP-GRTDNSIKNHWNS 212 579*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.216 | 60 | 111 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-15 | 61 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-15 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 65 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 67 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-13 | 68 | 111 | No hit | No description |
PROSITE profile | PS51294 | 30.926 | 112 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-30 | 114 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-17 | 116 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-17 | 117 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.30E-15 | 119 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-26 | 120 | 166 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 167 | 218 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.481 | 168 | 218 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-15 | 168 | 216 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 169 | 212 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-11 | 171 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MTAVKVEERE GTAVDWRNLE VPLPPTSPLK TESCGGGAPM SPAVYSPADS VSAHRRTSGP 60 VRRAKGGWTP EEDENLRKAV SAFKGRHWKK IAEFVPHRTE VQCLHRWQKV LNPELVKGSW 120 TQEEDDIIIN LVKKHGPKKW SVIASSLDGR IGKQCRERWH NHLDPQIRKE AWTVEEEHVL 180 ANAHHVYGNK WAEIAKLLPG RTDNSIKNHW NSSLKKRLDH YKTSSTLPVS MPIVHDSLKH 240 VKKPIALNHI DLNKDPDMHL EGPPEIVGHS ERTSHLHACN VKDIKSCLEF LSLSMPTAQQ 300 EIPCEAVVAQ DSSVALAMQG LKLDAVDDKS TEYKIVCEGV GVGSLNLEAA DVGRIIDRMT 360 YSVPIRPGCK TDSNLCELSL MNESSSSLGS LCYQIPKLED IIPAHSPVFS RHHVQDNRVD 420 GFQSPIGFST FSPVDGNTRD QLSVESILKS AAETFPGTPS ILRRRKREKP LDAQESKIKI 480 DILNGDSFHT PVGKCAAVSP HSFKTATFLS LGPPDGEELS AALGSVDVSP AYRLRSKRMA 540 VVKSIERQLD FSMDEMDNHS TTTDILLKTT SWNTNSSTGV SSMPEKSMRK HIDLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-66 | 64 | 218 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-66 | 64 | 218 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 462 | 469 | RRRKREKP |
2 | 463 | 468 | RRKREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_04889A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961857.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_014660295.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_022681301.1 | 0.0 | transcription factor MYB3R-2 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0A9DCG7 | 0.0 | A0A0A9DCG7_ARUDO; Uncharacterized protein | ||||
STRING | Si021484m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-103 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_04889A |
Publications ? help Back to Top | |||
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