PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_04876A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 201aa MW: 20998.5 Da PI: 8.6213 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H +H Oropetium_20150105_04876A 45 FECKTCGRRFPTFQALGGHRASH 67 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.8E-9 | 43 | 119 | No hit | No description |
SMART | SM00355 | 0.11 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.0E-12 | 45 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.785 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-8 | 96 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.746 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAISGVSSSG SDYCSMPTME NEPGVATVRI XXXXXXXXXX GGRLFECKTC GRRFPTFQAL 60 GGHRASHRRP AGPYYSLGNR KLVAAQEGAC APGPRVHGCP ICGVEFAVGQ ALGGHMRRHQ 120 AAAANARVQV SRAVTPEACS FGAAASAKDD DNAGNCVGGI CLELNMTPSA SCVKCQKNAR 180 RAENVDTRLH PLTGCCITMV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_04876A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805950.1 | 1e-42 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A1E5USH4 | 2e-44 | A0A1E5USH4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J32634.1.p | 2e-39 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 4e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_04876A |