PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04704A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 353aa    MW: 36797.5 Da    PI: 7.8604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04704AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011150172123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C  C+k+F++   L  H  +H
  Oropetium_20150105_04704A 150 YECRTCNKCFPTFQALGGHRASH 172
                                99**********99999998887 PP
2zf-C2H213.50.00022247269123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg  Fs+   L  H+r+H
  Oropetium_20150105_04704A 247 HECSICGAEFSSGQALGGHMRRH 269
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-8149172No hitNo description
PfamPF139122.2E-10149174IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014150177IPR007087Zinc finger, C2H2
SMARTSM003550.16150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-8242269No hitNo description
PfamPF139126.9E-13246270IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806247274IPR007087Zinc finger, C2H2
SMARTSM003550.01247269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MQTERESNKL PAPPLIMMAP TSSSTEEHSG GELDRHQPIA GAVVKRKRTQ RPRHHPPASS  60
ASSSESTTTE EEDMAHCLIL LAQGGGAAGA VVVDSKPSSP PAVPPTAQEP SPATAAPPAP  120
VAVKSERYTS RKYTEAASTA DGVKAGFYVY ECRTCNKCFP TFQALGGHRA SHKKPRLXXX  180
XXXXXXXXXT TAATNKQPPP PMTMTTPPPP PPLPRVVVDI ADVTTALSLN SHVAAATGGG  240
SGKLRVHECS ICGAEFSSGQ ALGGHMRRHR PLNAPERAAT TTTAINLLDT TTTTKKEEAG  300
GGINLELDLN LPAPSDESSL PPPVVLGLGQ FNDGNKAGGL VLTASALVDC HY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04704A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039893e-62AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040263e-62AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149583e-62AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-62CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-117zinc finger protein ZAT5-like
TrEMBLA0A2S3GUR41e-116A0A2S3GUR4_9POAL; Uncharacterized protein
STRINGSb04g037850.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-39C2H2 family protein