PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04583A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 294aa    MW: 32431.5 Da    PI: 7.196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04583AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.4e-50101361128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrF P+deelv++yL++kv++       v+ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWk
  Oropetium_20150105_04583A  10 LPPGFRFYPSDEELVCHYLHNKVANAG----GVMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWK 89 
                                79**********************998....5789*************87788999**************************** PP

                        NAM  85 atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atgkd+ +++    ++++vg++ktLvfy+grap+g kt+Wvmhe+r+
  Oropetium_20150105_04583A  90 ATGKDRVIHNPkaaGRAVVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 136
                                *********987877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-597155IPR003441NAC domain
PROSITE profilePS5100557.31610155IPR003441NAC domain
PfamPF023653.9E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVANAGGVMV EVDLHTHEPW ELPDVAKLST  60
NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KAAGRAVVGM RKTLVFYRGR  120
APNGIKTSWV MHEFRMENPH IPPKEDWVLC RVFYKKKADA FDYAMADSEQ EIAMARSAIA  180
SRKYSSSSSD PGYSPPFPAL LGSTHHYQLP PPSSDHLGSS SAGPANDFSA MALLQHNGIF  240
DFHAQPLDTG SVLAAAAGPS SSRDGSGEQQ CSGGALMDLG LEEHYSYNGL LQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4811604169NO APICAL MERISTEM PROTEIN
1ut4_B5e-4811604169NO APICAL MERISTEM PROTEIN
1ut7_A5e-4811604169NO APICAL MERISTEM PROTEIN
1ut7_B5e-4811604169NO APICAL MERISTEM PROTEIN
3swm_A6e-4811607172NAC domain-containing protein 19
3swm_B6e-4811607172NAC domain-containing protein 19
3swm_C6e-4811607172NAC domain-containing protein 19
3swm_D6e-4811607172NAC domain-containing protein 19
3swp_A6e-4811607172NAC domain-containing protein 19
3swp_B6e-4811607172NAC domain-containing protein 19
3swp_C6e-4811607172NAC domain-containing protein 19
3swp_D6e-4811607172NAC domain-containing protein 19
4dul_A5e-4811604169NAC domain-containing protein 19
4dul_B5e-4811604169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04583A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640021e-102AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824302.11e-159protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9FLJ24e-60NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2S3GUT51e-158A0A2S3GUT5_9POAL; Uncharacterized protein
STRINGPavir.J34679.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-81NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]