PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04440A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 410aa    MW: 43682.5 Da    PI: 7.6679
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04440AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151462148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  Oropetium_20150105_04440A 14 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                               79*********************************************97 PP
2Myb_DNA-binding36.21.4e-1169116246
                                SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                                g +T+eE+ ++  +    G++    +W+ Ia+ ++ gRt++++k++w++
  Oropetium_20150105_04440A  69 GDFTEEEEHIICSLYISIGSRnfmfRWSIIAAQLP-GRTDNDIKNYWNT 116
                                789********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.397966IPR017930Myb domain
SuperFamilySSF466891.37E-2311114IPR009057Homeodomain-like
SMARTSM007173.7E-121364IPR001005SANT/Myb domain
PfamPF002499.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-241569IPR009057Homeodomain-like
CDDcd001674.50E-91662No hitNo description
PROSITE profilePS5129414.95267122IPR017930Myb domain
SMARTSM007177.3E-767120IPR001005SANT/Myb domain
PfamPF002493.1E-1069116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2170122IPR009057Homeodomain-like
CDDcd001679.32E-771116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEEEEHIIC SLYISIGSRN FMFRWSIIAA QLPGRTDNDI KNYWNTKLKK  120
KLLGKRAPSR RARANQDPYL STAAAAVGGN NTMCSTSSNN NSGGSNAAMA TQALSASALE  180
RIQLHMRLQG LYGAAFGCAA GGDSATTAPH WPKLETLLTS NKLQIPATEP VDAVATTAVC  240
VQPPHHQHVV DQSIATAGRA AVVEAEQLGS SGAGAAYNMP CNFDRPNNNK LGFCSVVPAA  300
TTEAAEFASG LMVXXXXXXX XXXXLHHDEL YDFLYNKYGS LGAAGGHIIP SSLPELQCPD  360
GAAIVGADEK FATWTAASSC DYGTAAGHVL QGNPIAGSLQ DYTLGGYDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141227108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04440A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648054e-58AK364805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314448.11e-161transcription factor MYB36
SwissprotQ9FKL29e-81MYB36_ARATH; Transcription factor MYB36
TrEMBLC5XU901e-160C5XU90_SORBI; Uncharacterized protein
STRINGPavir.Ab03119.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-78myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]