PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04419A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 372aa    MW: 40548.8 Da    PI: 4.5391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04419AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19118167255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+G+r+++ +g+W+AeIrdps+     r++lg++ ++eeAa+a++a +++++g
  Oropetium_20150105_04419A 118 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNSPEEAARAYDAEALRIRG 167
                                69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.012118175IPR001471AP2/ERF domain
SMARTSM003802.6E-38118181IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22118175IPR016177DNA-binding domain
CDDcd000185.02E-33118177No hitNo description
Gene3DG3DSA:3.30.730.102.0E-31118176IPR001471AP2/ERF domain
PRINTSPR003672.6E-10119130IPR001471AP2/ERF domain
PfamPF008472.5E-12119167IPR001471AP2/ERF domain
PRINTSPR003672.6E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCGGAILANL TNQPGPRRLT EGALWPEKKK PKRGGGGGRR YPAGFEEDDV DFEADFEEFE  60
VDSGDSDLEL GKEEDDDVVE IKPFAAKRNF SGDGLSIMTT ATFDSPAARS AKRKRKNQYR  120
GIRQRPWGKW AAEIRDPSKG VRVWLGTYNS PEEAARAYDA EALRIRGKKA KINFPETPAA  180
VQKRRSGSAA ARAPKSSFEQ KPTVKAAVNN PINTRGSLYP SAPNTTNKKV QPDNMTFSPA  240
INTSAPIEDP ILNLHSDQGS NSFSYSDLGW ENDTKTPDIT SITPISTIPE GNESEFLNSN  300
SNGSVVLPVM DNSPVDLTEG LTDLEPFMRF LLDDGASESI DSLLNLDGSQ DGVSNMDLWS  360
FDDIPISGDF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20118175563ATERF1
3gcc_A4e-20118175563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04419A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816350.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-162ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A3L6RNH80.0A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like
STRINGPavir.J04875.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.12e-34related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]