PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04387A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 627aa    MW: 70095.9 Da    PI: 6.1518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04387AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07509556347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
  Oropetium_20150105_04387A 509 AWTLCEVMKLVDGVALYGAGKWSEIRKLAFssySYRTSVDLKDKWRNL 556
                                7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.635502561IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-11504559IPR009057Homeodomain-like
SuperFamilySSF466894.13E-14504559IPR009057Homeodomain-like
SMARTSM007173.0E-7506559IPR001005SANT/Myb domain
CDDcd116606.06E-17508558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MEVDGSHDAP DNKCGENDFE KKHNSDPVVY QLVRVEGDGT LVPATEDEVL QFEHFLHDEK  60
VDLPSIEDVD HVEELFSNDC ILLKKPDSEA DDSSKLETAA VSTEKFPTGL EESRLQSLDD  120
SLSSPLECTF VHDQQPDKLH LEQWDNKIAH LENASTETAK STVLNDSFIA EKDNTDACSR  180
PVDDSCTRQT DSRVTTPVPD FSILRGEVSL DDLTIRELQE VFRTAFGQQT TVKDKIWLKR  240
RITMGLTTSC DIPSSGCVVK DYRIFGKDGK PDIGNMKESP EAELQVISLV RDQVIDPIYE  300
RSSLSSSYYQ SEDQPGSSKR LKRVPITNDE QQKNLLPEQC TIKRIRKPTK RFIEELSDAE  360
ACDSIGKLSS QEKKVMCDEV VLKPWATPFH EVDSLKKSYT TRKDTFGGVS IHVPYVSRMR  420
RGRPRKDFIS FEDNKSSVEF KETQTTVGTI LEKDGKEGNH LWKAFEAPPM VSAVKGGHKQ  480
AVDKLHGNNC NAAARPKINR AFTRKHHRAW TLCEVMKLVD GVALYGAGKW SEIRKLAFSS  540
YSYRTSVDLK DKWRNLIRAS KTQLPTLEDG GCPRKTNPSV VPIPTSILLR VKELNELQSP  600
GGGSTVPVKF TGSNSKVVQG KGSGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419425RRGRPRK
2419426RRGRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04387A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801371.10.0uncharacterized protein LOC112880841
RefseqXP_025801378.10.0uncharacterized protein LOC112880841
TrEMBLA0A3L6QDN40.0A0A3L6QDN4_PANMI; Uncharacterized protein
STRINGPavir.Aa00316.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-69TRF-like 6