PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_04385A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NF-YA | ||||||||
Protein Properties | Length: 253aa MW: 27251.6 Da PI: 10.3194 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.8 | 1.5e-32 | 98 | 154 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVN+KQy++Il+RRq Rakle+++kl k+rkpylheSRh hA++R+RgsgGrF Oropetium_20150105_04385A 98 DEPIYVNPKQYRGILRRRQLRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGSGGRF 154 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.0E-37 | 96 | 157 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.116 | 97 | 157 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.9E-28 | 99 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-22 | 100 | 122 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-22 | 131 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLLPASSSSS ASKGYPFKKT VDDHMSTILT FGNKQSLFVS QSIDYGQSIA CISYPYNDSG 60 SGGLWTAYGS HTSTVSHPQI TGGSIAGRVP LPLELAEDEP IYVNPKQYRG ILRRRQLRAK 120 LEAQNKLVKA RKPYLHESRH LHAMKRARGS GGRFLNTKQL QQQEQSATPY KDSTNFSGST 180 HLRLGGGGGG SAPAPKAMAS QENSKKACSS APDLFQFPGQ HLSFSDYFGQ SSAQNGVAVL 240 HNGAQQMVSV MR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 98 | 159 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_04385A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824571.1 | 1e-112 | nuclear transcription factor Y subunit A-8-like isoform X1 | ||||
Swissprot | Q93ZH2 | 5e-40 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A3L6RW30 | 1e-112 | A0A3L6RW30_PANMI; Nuclear transcription factor Y subunit A-8-like | ||||
STRING | Pavir.Aa00318.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13276 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 6e-42 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_04385A |