PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04359A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 701aa    MW: 77437.8 Da    PI: 7.5715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04359AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-171978156
                               TT--SS--HHHHHHHHHH....HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  1 rrkRttftkeqleeLeel....FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               +++ +++t+ q+++Le++    F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Oropetium_20150105_04359A 19 KKRYHRHTPRQIQQLEAYvhrmFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 78
                               678899**********64333399*********************************998 PP
2START744e-2428443144163
                                CEEEEEEEECCSCHHHHHHHHHCCCGG.................CT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTX CS
                      START  44 sgealrasgvvdmvlallveellddke.................qWdetla....kaetlevissg.....galqlmvaelqal 101
                                 +e +r+sg+v+m +  lv  ++d+                   +W e ++    ka t++v+ +g     + l+lm+ el ++
  Oropetium_20150105_04359A 284 XVEGSRDSGLVFMSAIGLVDMFMDSYFacrihcvtcaghcfpqsKWMELFPaivsKARTIDVLVNGmagrsESLVLMYEELHVM 367
                                57789999999999999999999988888999999999999999******99999***************************** PP

                                X-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEE CS
                      START 102 splvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghsk 163
                                sp+vp R+f f+Ry+r  + g w+i+dvSvd +q      ++  R+ +lpSg+li +++ng+sk
  Oropetium_20150105_04359A 368 SPVVPtREFCFLRYCRMIEHGLWAIADVSVDLPQRDARfGAPPQRSCRLPSGCLIADMANGYSK 431
                                ************************************99************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-17978IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-191378IPR009057Homeodomain-like
PROSITE profilePS5007115.7751680IPR001356Homeobox domain
SMARTSM003898.5E-131784IPR001356Homeobox domain
CDDcd000866.07E-181878No hitNo description
PfamPF000464.1E-151978IPR001356Homeobox domain
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PROSITE profilePS5084820.781289431IPR002913START domain
PfamPF018522.6E-18327431IPR002913START domain
SuperFamilySSF559617.42E-14328431No hitNo description
SuperFamilySSF559616.32E-18454690No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDFGGDDVME GGSDAQRRKK RYHRHTPRQI QQLEAYVHRM FKECPHPDEN QRMQLSRELG  60
LEPRQIKFWF QNRRTQMKVC YLFRPSGQAQ HERADNCFLR AENDKIRCEN IAMREALRNV  120
ICPTCGGPPV ADDYFDEQKL HYEFERFRVV QLDRVSSLTS KYLGRPITQL PPVQPLSMSS  180
LDLSVGGLGS PSLVGPSLDL DLLSGASSGL AAAAFHLPAP VSDMERPMMA EMATRXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXVEGSRD SGLVFMSAIG  300
LVDMFMDSYF ACRIHCVTCA GHCFPQSKWM ELFPAIVSKA RTIDVLVNGM AGRSESLVLM  360
YEELHVMSPV VPTREFCFLR YCRMIEHGLW AIADVSVDLP QRDARFGAPP QRSCRLPSGC  420
LIADMANGYS KRACERYACL VTPGMPHREM AGVTPEGKRS MMKLSQRMVS SFCASLSASQ  480
LHRWTTLSGP NNNDVGVRVM VHRSTDPGQP SGVVLSAATS IWLPVPCERV FAFVRDENTR  540
SQWDVLSHGN PVQEVSRIPN GAHQGNCISL LRGLNASQNS MLILQESCTD ASGSLVVYAP  600
IDIPAANVVM SGEDPSAIPL LPSGFTILXX XXXXXXXXXS AAATKTTPAS GSLVTVAFQI  660
LVSSLPSSKL NAESVATVNS LISTTVEQIK AALNCASSGH *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04359A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7285230.0KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142912.20.0uncharacterized protein LOC100275344
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLG2J5S70.0G2J5S7_MAIZE; HB transcription factor
STRINGGRMZM2G126646_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-125homeodomain GLABROUS 11