PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04346A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 586aa    MW: 62553.6 Da    PI: 4.838
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04346AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30326385159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Oropetium_20150105_04346A 326 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 385
                                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31311387IPR003657WRKY domain
SuperFamilySSF1182903.14E-27319387IPR003657WRKY domain
PROSITE profilePS5081128.529321387IPR003657WRKY domain
SMARTSM007741.4E-37326386IPR003657WRKY domain
PfamPF031061.1E-26327385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEVEPGE DDRSSRGDDG DGWSNDASEM MDKEEEGQLV NNKQRGGDQE  60
LKEETNKEKV VEVVVDQGGK GSKEEVKYRT QPGEEMEEDK QLAEEGDGND ESDGAETTRA  120
ENKHEVEDAG NSIGGGDNHV AMEQDEVSVM QEEMEKMKEE NQMLRRVVDR TVRDFNELKM  180
KLAAYQQQPA DDPKEHEVFL SLGAASAVPA EPKLKRKDPQ PQSTRRPSSL SSDDTDDGKE  240
DLGLSLRLGA AYEEEKLVGA GLDHDGXXXX XXXXXXXXXX ALLESSKLGP PAAGDLAAAG  300
VASQSVNPAN RKTRVSVRVR CQGPTMNDGC QWRKYGQKVA KGNPCPRAYY RCTVAPGCPV  360
RKQVQRCLED MSILVTTYEG THNHPLPVGA TAMASTTSAA ATFMLLSSTN SSSISDTGDA  420
MAAPPYLTPY TLNSTAHHSA ASSLLTAPPS SMSGASGMQH LNMFGHSSTL AHQQAPPHLS  480
NKYPWSSSSP TGMQGTGGGL TGGKRPFWST AGGGDDKTTA ATLPENVGAV ISDPSKFSMA  540
IATAINSFMG KDGQVMTTGG KDGESSSKGS TKQWGVVESL PHPHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21313389176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04346A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLK3YR970.0K3YR97_SETIT; Uncharacterized protein
STRINGSi016791m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-52WRKY DNA-binding protein 9