PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04202A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 370aa    MW: 40827.1 Da    PI: 6.3341
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04202AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.1e-11165221155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s ++GV++++++g+++A+++d  +   g +rk  + g+++t+e+Aa+ ++ a++k++g
  Oropetium_20150105_04202A 165 SSFHGVTRHRWSGKYEAHLWDsSCRiEGrRRKGKQ-GSYDTEEKAARSYDVAALKYWG 221
                                5799*****************76667776667777.********************98 PP
2AP249.31.3e-15285336155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  Oropetium_20150105_04202A 285 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 336
                                57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-16165230No hitNo description
SuperFamilySSF541716.02E-14165229IPR016177DNA-binding domain
SMARTSM003803.3E-19166235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-13166230IPR001471AP2/ERF domain
PROSITE profilePS5103217.846166229IPR001471AP2/ERF domain
PfamPF008474.0E-8166221IPR001471AP2/ERF domain
CDDcd000183.61E-22285344No hitNo description
PfamPF008471.7E-9285336IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17285346IPR016177DNA-binding domain
SMARTSM003801.1E-27286350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-19286345IPR001471AP2/ERF domain
PROSITE profilePS5103218.571286344IPR001471AP2/ERF domain
PRINTSPR003671.7E-5287298IPR001471AP2/ERF domain
PRINTSPR003671.7E-5326346IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEKEKATGE SGSDDGKMES SQSINLNRAP AVGVEVCRTQ KNGETRIAVV SDAKDSSTRK  60
ESVVADQRKS PKLEQADYEG EIGGHAENPV QKDGLVTLVG NEGRADCGDE DGRAQVLSIV  120
KKHEPADEHD DAINPVTVAG FREDTAAVDA SAGITAVRPA GSRSSSFHGV TRHRWSGKYE  180
AHLWDSSCRI EGRRRKGKQG SYDTEEKAAR SYDVAALKYW GPDTRLNFPA IPSVLYYQLH  240
NSFNGSTSFQ VSQYEKELED IKDLSREECV TYLRRRSSCF SRGASIYRGV TRRQKDGRWQ  300
ARIGLVAGTR DIYLGTFKTE EEAAEAYDIA AIEIRGKNAV TNFDRSNYMD RGMHCIEGEG  360
LRLLASKPE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191198GRRRKGKQ
2273294RRRSSCFSRGASIYRGVTRRQK
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04202A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574601e-124EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953856.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE13e-75AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-74CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLK3YTI50.0K3YTI5_SETIT; Uncharacterized protein
STRINGSi017580m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-66AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]