PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_04194A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 329aa MW: 36023.6 Da PI: 8.885

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_04194A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.9	7.4e-31	4	80	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Oropetium_20150105_04194A 4 TGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSdGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 80 5789************************************966677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.591	1	112	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-35	4	112	IPR003441	NAC domain
Pfam	PF02365	1.5E-12	8	80	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
LASTGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSDGSK CIGLKKSLVF 60 YKGRAAKGVK TDWMMHEFRL PSLTDPSLPQ KKPLDKTIPP NDSWAICRIF KKTNSTAQRA 120 LSHSWVSPPL SSTNETYIPP SSHATQRGRH SSENTSSSMT DMVSSTIQFT GSCYLSSIGH 180 SSSHNPLSII DSSSMPPASI ALPISGAEQQ NMSVLPAIPL DLPAGMDIAS MVLNATPNSL 240 QNMGRIPTNI DFLQPQQCNS NNSSSLVNRC TVDLPDVGST VNGVPRSINF PFNLQGVLPD 300 DWRMTLPWDS LPCTTEVSTT YQSTKCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-33	2	119	66	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-33	2	119	66	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-33	2	119	66	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-33	2	119	66	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-33	2	119	69	174	NAC domain-containing protein 19
3swm_B	5e-33	2	119	69	174	NAC domain-containing protein 19
3swm_C	5e-33	2	119	69	174	NAC domain-containing protein 19
3swm_D	5e-33	2	119	69	174	NAC domain-containing protein 19
3swp_A	5e-33	2	119	69	174	NAC domain-containing protein 19
3swp_B	5e-33	2	119	69	174	NAC domain-containing protein 19
3swp_C	5e-33	2	119	69	174	NAC domain-containing protein 19
3swp_D	5e-33	2	119	69	174	NAC domain-containing protein 19
4dul_A	5e-33	2	119	66	171	NAC domain-containing protein 19
4dul_B	5e-33	2	119	66	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_04194A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC196472	1e-113	AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454285.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	2e-72	FEZ_ARATH; Protein FEZ
TrEMBL	C5XYT2	0.0	C5XYT2_SORBI; Uncharacterized protein
STRING	Sb04g028015.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13717	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-72	NAC family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_04194A

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]