PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_03987A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 26388.1 Da PI: 10.4428 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.7 | 1.5e-30 | 48 | 143 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k+ tpsdv+k++rlv+pk++ae+h +g+ +++ l +ed g+ W+++++y+++s++yvltkGW++Fvk++gL Oropetium_20150105_03987A 48 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaaiSGECSKGVLLNFEDAAGKAWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 131 89***************************99999997778899***************************************** PP -TT-EEEEEE-S CS B3 75 kegDfvvFkldg 86 ++gD v F++++ Oropetium_20150105_03987A 132 RAGDAVGFYRSS 143 ********9654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-38 | 43 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.72E-29 | 46 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.09E-29 | 46 | 142 | No hit | No description |
PROSITE profile | PS50863 | 12.731 | 48 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-27 | 48 | 143 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-21 | 48 | 150 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MLRKHTYLEE LAQNRPAFAA AVVSPSPPPK NPASDPPGTT SAAREHLFDK TVTPSDVGKL 60 NRLVIPKQHA EKHFPLQLPA AAISGECSKG VLLNFEDAAG KAWRFRYSYW NSSQSYVLTK 120 GWSRFVKEKG LRAGDAVGFY RSSSPAAGGN KQQQQLYIDC KVRPRTTTTT AFVNAATSSS 180 SPPAKKTVRL FGVDLLTKPA PTVQEEEILA VNKRTRDFIT SSSTTPHMFF KKQCIDFALT 240 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-52 | 45 | 163 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_03987A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT041962 | 2e-99 | BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807648.1 | 1e-107 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
Swissprot | Q6L4H4 | 7e-86 | Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A2T7EAR2 | 1e-108 | A0A2T7EAR2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13012.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 3e-62 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_03987A |
Publications ? help Back to Top | |||
---|---|---|---|
|