PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03892A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 312aa    MW: 34209.5 Da    PI: 8.9062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03892AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1041.9e-32652071128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+r
  Oropetium_20150105_03892A  65 LPAGVKFDPTDQELL-EHLEGKARPESrklhplV---DefipTLEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTR 143
                                799************.99****999985664332...232222333336**********.555666688*************** PP

                        NAM  74 knra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                k+r+          + +W++tgk+++vls +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Oropetium_20150105_03892A 144 KRRKvhsededgGGETRWHKTGKTRPVLS-DGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 207
                                ***84555544433778************.99************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3856226IPR003441NAC domain
PROSITE profilePS5100532.4765226IPR003441NAC domain
PfamPF023659.8E-1566207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTWCNGFNDI RAAVDNGLLS PAGVVAAAGK KAAASLAVLV KMCPSCGHRA QFEQETTTIQ  60
DLPGLPAGVK FDPTDQELLE HLEGKARPES RKLHPLVDEF IPTLEGENGI CYTHPERLPG  120
VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS EDEDGGGETR WHKTGKTRPV LSDGRPRGYK  180
KILVLYTNYG KQRKPEKTNW VMHQYHLGSD EEERDGELVV SKVFFQTQPR QCGSAKEPAG  240
AANTNNPGVK NALAGHLQVH REANVAEYYG PAMIGYAQVV PNNRSAEAAA HFMPNFAVHA  300
GRTSFGPESI H*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03892A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5507060.0KU550706.1 Bambusa emeiensis NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.11e-160NAC domain-containing protein 73
SwissprotO494591e-120NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A109PNR31e-170A0A109PNR3_BAMEM; NAC1
STRINGPavir.J04559.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]