PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03850A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 214aa    MW: 22512 Da    PI: 8.5525
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03850AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.72.1e-2097131135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Oropetium_20150105_03850A  97 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 131
                                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.03591127IPR000679Zinc finger, GATA-type
SMARTSM004018.2E-1991143IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-1491132No hitNo description
Gene3DG3DSA:3.30.50.103.2E-1795131IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.59E-1396128No hitNo description
PfamPF003204.5E-1897131IPR000679Zinc finger, GATA-type
PROSITE patternPS00344097122IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MLQELCGGGA VGSAAFSLLF PVTDGQFGYG GEEDRGLSCG GAPVDCTLSL GTPSTRRAEV  60
KVSAHARHGG GGDRHDLGAV ASCNESGRGR FPARRRCANC DTTSTPLWRN GPRGPKSLCN  120
ACGIRYKKEE RRAAAAATTQ DTTGAYAYAT YARHSHPPPH QQWGCYGSSG TKPSYGDNAA  180
VDGPCLSWML NVMPSSSPAF AAVRERPTLF QYY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03850A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681231.12e-58GATA transcription factor 15
TrEMBLA0A1E5WAB73e-58A0A1E5WAB7_9POAL; Uncharacterized protein
STRINGSi024214m1e-57(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-25GATA transcription factor 20