PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03839A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 327aa    MW: 35074.6 Da    PI: 8.5788
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03839AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.22.4e-20236298163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                e+elkre+rkq+NRe+ArrsR RK+ae+eeL++ v++L  eN +Lk+e+++l++ ++kl+ e+
  Oropetium_20150105_03839A 236 ERELKREKRKQSNRESARRSRMRKQAETEELATQVESLAHENASLKSEISKLTNSSEKLRLEN 298
                                89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-27192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.9E-18232295No hitNo description
SMARTSM003381.5E-21236300IPR004827Basic-leucine zipper domain
PfamPF001706.6E-19236298IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128238301IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-11239294No hitNo description
CDDcd147021.81E-22241288No hitNo description
PROSITE patternPS000360243258IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAHDEAVTTQ KTGKAASPPK DQPAPYPYPD WSTMQAYYGP GVLPPTYLAP AIAPGHAPPY  60
MWGPQPIMPH PFGTPYAAMY PHNGAYPHPL VPMMSNPLNV EPTKSANSKE KGFSKKLKEI  120
DGTAASAGSG NSKKSTSSSE DFSAEGSSDV NDQKVSKTPR KRTSDNGPGS ETNAAANHTL  180
GHPSILPHHC FPVPVIKPSA TNVVNSGAVA ATISPSPGVM VPAHTGVPTD LTIKDERELK  240
REKRKQSNRE SARRSRMRKQ AETEELATQV ESLAHENASL KSEISKLTNS SEKLRLENSA  300
LLVLILLVDR YLCHNESECS ICIPLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252259RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03839A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807251.11e-179common plant regulatory factor 1-like isoform X1
TrEMBLA0A0A9PLG00.0A0A0A9PLG0_ARUDO; GBF1
STRINGSb09g028990.11e-173(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-37G-box binding factor 3