PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_03825A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NF-YB | ||||||||
Protein Properties | Length: 207aa MW: 22093.9 Da PI: 7.1805 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 75.3 | 9e-24 | 15 | 62 | 2 | 49 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 +eqdr+lPian+srim++++P n+k++kdake vqecvsefi+f+ts+ Oropetium_20150105_03825A 15 KEQDRYLPIANISRIMRRAVPDNGKMAKDAKEAVQECVSEFIGFITSD 62 89********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.6E-21 | 13 | 61 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.99E-18 | 17 | 85 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-14 | 20 | 63 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Pfam | PF05678 | 2.1E-9 | 135 | 161 | IPR008889 | VQ |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSEGEYALEG GAGGKEQDRY LPIANISRIM RRAVPDNGKM AKDAKEAVQE CVSEFIGFIT 60 SDTLGFEEYV EPLKLYLKLY REGRRQCNCC CGSLDTCISG CKTHKSAFDL LIGFKPATGK 120 AMSRDDEAKP LTVKIIETVF VEADTADEFK SVVQRLTGKG GAAAQPEQGS RPPPQAAAHQ 180 RIGAGKEGGG SRGDREAGTS APKRDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 2e-26 | 15 | 82 | 3 | 93 | NF-YB |
4awl_B | 2e-26 | 15 | 82 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 2e-26 | 15 | 82 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_03825A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104284 | 1e-35 | AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence. | |||
GenBank | AP014961 | 1e-35 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-35 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9FLQ6 | 1e-54 | B9FLQ6_ORYSJ; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18750 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.7 | 4e-30 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_03825A |