PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03775A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 274aa    MW: 29153.3 Da    PI: 6.3837
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03775AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-20155189135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Oropetium_20150105_03775A 155 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 189
                                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-20149199IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.325149185IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14150188No hitNo description
Gene3DG3DSA:3.30.50.101.1E-17153189IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.98E-15154186No hitNo description
PROSITE patternPS003440155180IPR000679Zinc finger, GATA-type
PfamPF003203.6E-18155189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLDRYYYESM AAAAAASSTT FSLFFPPLPN KVQYWADEVA AADDEHSSVV TTSPSSPSSS  60
TDSVDCTLSL WTPSSRRAAE SVIALELTDN DKHVAPHPSS AVSSWDVDVV ADHHYHSRQQ  120
QQQLQGGMCK PARGSAKLAV VGCAADNASS VDRRCANCGT SSTPLWRNGP RGPKSLCNAC  180
GIRFKKEERR AAAMENVGGA AAVGCGYSAQ RAQYEYGTAA AVQYEVPFPC GGRGDPDASA  240
PFLAWRPLNV VAPAPAPAFD AVWPERTSLY HYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03775A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9678504e-42EU967850.1 Zea mays clone 306547 GATA transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963570.19e-49GATA transcription factor 15
TrEMBLA0A0E0L6587e-51A0A0E0L658_ORYPU; Uncharacterized protein
STRINGOPUNC05G24550.11e-51(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-20GATA transcription factor 19