PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03756A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 631aa    MW: 69884.7 Da    PI: 4.4579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03756AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.81.4e-25221612127
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgk.rknratk.... 79 
                                p Gf+F+Pt eelv+ yL++k+eg kl++ e+++ev+i++++P +L +k+ka +e++wyfFs+r+ +++++k ++ r+++    
  Oropetium_20150105_03756A  22 PIGFHFEPTVEELVDVYLRRKIEGGKLPV-EIVNEVNILEWQPGKLVEKYKAfGEDQWYFFSRREPSSSNKKeESGRKVRvpgv 104
                                89***************************.89**************8655554888********98887644233444333445 PP

                        NAM  80 sgyWkatgkdkevlskkgel...........vglkktLvfykgrapkgektdWvmheyr 127
                                s++W a+g+ +ev ++++++           +g+k++L++++ +a++    +W mhe  
  Oropetium_20150105_03756A 105 SATWTASGRLTEVRREGKNKygavgpadgtvIGTKRVLIYHSSDAED--DGKWSMHEHV 161
                                999***********98443355555666666**********877777..89******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-2616171IPR003441NAC domain
PROSITE profilePS5100529.46321179IPR003441NAC domain
PfamPF023657.0E-1622160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MDRPETSSST KPHDLVRQLR FPIGFHFEPT VEELVDVYLR RKIEGGKLPV EIVNEVNILE  60
WQPGKLVEKY KAFGEDQWYF FSRREPSSSN KKEESGRKVR VPGVSATWTA SGRLTEVRRE  120
GKNKYGAVGP ADGTVIGTKR VLIYHSSDAE DDGKWSMHEH VVNAYSQIGQ YALYSIHEIQ  180
RKDEEESDTE NKPKQKRKRK EKTVNAEPDK KTTKRKKVVP ARQKKKQGAP PPLTLSEPDH  240
QTPPPNLPSV PLXXXXXXXX XXYPPYGNQF LGGSVPMSTG HEQNMYNMQQ TLGNHQYSMG  300
NYGDPCSSDT TSQFNMPQIF GNQEASLMWS DQHLMPPPNS NFDDGAHLSL PPCDIMEPSY  360
TGNQLLQQAG PSFTHNATQN IYNWGLGQNQ INQQGGYAAI GQIETQDYDG QNQINHQGGY  420
AAVGQIGAQD YDGQNQINQQ GGDAAIGQFG AQDYDGQNQI NQQWGDAAIG LIGAQDSDDQ  480
NQINQQSDDA IGAQGFDGSH DQPYETQQQG HGYGAVPGQE TTDSGPYDQV TVSLDHPSSS  540
SDDDDMDEYF AYDQFMKDTG RTSTLVEHAV GNNEQAAGDT MSIEGDDDTG KWVLFAGVEC  600
FLESVPGDFL ELEVVREQSG NDTTDPILQN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-14111605138Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RKRKEK
2197216KRKEKTVNAEPDKKTTKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03756A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.25e-17NAC family protein