PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03677A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 399aa    MW: 44152.6 Da    PI: 9.0738
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03677AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-1672131155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Oropetium_20150105_03677A  72 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 131
                                789******************888855666447*************************98 PP
2AP251.32.9e-16174225155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Oropetium_20150105_03677A 174 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 225
                                89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1272131IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1672140IPR016177DNA-binding domain
PROSITE profilePS5103219.80973139IPR001471AP2/ERF domain
SMARTSM003801.1E-2473145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-1673140IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-17174234IPR016177DNA-binding domain
PfamPF008473.6E-11174225IPR001471AP2/ERF domain
CDDcd000181.55E-24174233No hitNo description
PROSITE profilePS5103218.979175233IPR001471AP2/ERF domain
SMARTSM003801.7E-26175239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17175233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDNLVMVKNE IENYSGPSPP VMINASEGGE VSHHQVVRRR RREPALLAPI GGGANGSGIG  60
KPLTSVTVKR SSRFRGVSRH RWTGRFEAHL WDKNSWNPTQ RKKGKQVYLG AYDEEEAAAR  120
AYDLAALKYW GPTTYTNFPV MDYEKELKIM ENLTKEEYLA SLRRKSSGFS RGVSKYRGVA  180
RHHQNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYKGVNAVT NFDLRSYITW  240
LKPSSTPVTF NPEALVMQST PAEQLLQTET QMLPRGNPFL LDHNAPPGSS GSHQEAAMIS  300
PGGIRKRGSS TALSLLLKSS MFRQLVEKNS DAEEAAGVIR EAGAHPGETY EYHNFFQADG  360
PDMCDLFSSG CDNVGEIACY DGPRSANWNG LGNMASLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03677A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961382.10.0ethylene-responsive transcription factor WRI1
TrEMBLA0A1E5WDW30.0A0A1E5WDW3_9POAL; Ethylene-responsive transcription factor WRI1
STRINGSi022186m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-80AP2 family protein