PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03560A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-PHD
Protein Properties Length: 558aa    MW: 61296.5 Da    PI: 4.5828
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03560AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox352.4e-113513901352
                                HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                   Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                ++L e+F+ + yps++ +e LA++lg+t rqV+ WF  rR
  Oropetium_20150105_03560A 351 QRLHEHFKTEAYPSRAVKESLAEELGITSRQVSRWFETRR 390
                                789**********************************999 PP
2PHD42.81.2e-1473128151
                                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                +C+ Cg+   + +++++lCdg C++ fH++Cl+++l +e++peg   wlC+ C++k
  Oropetium_20150105_03560A  73 FCATCGSkdVTLNNDIILCDGvCDRGFHQNCLNPPLLTEDIPEGdeGWLCPACDCK 128
                                7******64445********77***********************9*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.4E-1363131IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.6E-1370127IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.12871128IPR019787Zinc finger, PHD-finger
CDDcd155042.02E-2673125No hitNo description
PfamPF006288.0E-1273128IPR019787Zinc finger, PHD-finger
SMARTSM002492.8E-1173126IPR001965Zinc finger, PHD-type
PROSITE patternPS01359074125IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.6E-11319391IPR009057Homeodomain-like
PROSITE profilePS5007113.232336396IPR001356Homeobox domain
SuperFamilySSF466895.56E-10339391IPR009057Homeodomain-like
SMARTSM003895.5E-10339400IPR001356Homeobox domain
CDDcd000864.12E-10345391No hitNo description
PfamPF000461.2E-8351390IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MPQIQGVFEH FTGLKTLEKI RPEKELERAK GEILRCKLRI REVFQNLDAL LTKGKIDESL  60
FDSEGEISCE DIFCATCGSK DVTLNNDIIL CDGVCDRGFH QNCLNPPLLT EDIPEGDEGW  120
LCPACDCKID CIDVINELQG SDISIDDSWE KVFPEAAALS NGSKQDNPFD LPSDDSEDDD  180
FDPNMAEGQM ANESDFTSDS DDFCVEIAKS GGIDEVTKPS FPDTEPGDTP NDNERNPVQA  240
NIANSSLNLE TEIDQNLVLL GSGTRKFEQL DEKKLDDEEW SENSTPEKDN QELIEAKAKS  300
SGKGSRKTRG ASHSDGLTPH GSADQKCGGH LTSNGSNSTS RKGQFGPIVN QRLHEHFKTE  360
AYPSRAVKES LAEELGITSR QVSRWFETRR RFAKLASAKK GVHQDSISDE KTNGLGVANM  420
QVEDPEDIVM EQPDKCREET ENEDATSGNL NECGKQQGGL KKRIKRGRTS AATPPGSKQG  480
HATISRTESS PNGVSGDNSH IVASISDARR LNGNSAKHQI PEVDLVDEAR KKAIQRELKK  540
KKTGRNWIAR SEETNMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03560A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338675.11e-132uncharacterized protein LOC542536
TrEMBLA0A0A9GE960.0A0A0A9GE96_ARUDO; Hox1a
STRINGPavir.Ea02883.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.17e-66Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain