PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03488A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CPP
Protein Properties Length: 357aa    MW: 39576.8 Da    PI: 8.155
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03488AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.43.4e-1466103340
                        TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                +k+C CkkskClk+YC Cfa g +Cse+C C+ C+Nk+
  Oropetium_20150105_03488A  66 CKHCACKKSKCLKLYCPCFAGGGYCSEKCGCQPCFNKD 103
                                89**********************************96 PP
2TCR46.86e-15152187439
                        TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                ++CnCkks+ClkkYC+C+++g+ Cs  C+CedC+N 
  Oropetium_20150105_03488A 152 RSCNCKKSSCLKKYCDCYQEGTGCSLFCRCEDCQNP 187
                                78*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.4E-1364105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.09565189IPR005172CRC domain
PfamPF036384.6E-1067102IPR005172CRC domain
SMARTSM011141.9E-13149190IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-10152186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEATPISVKP PSPAPVATPP AIVEPQSSSQ PASGATEAEL GGMNQLALTP NVKRHKVEEA  60
ADGNGCKHCA CKKSKCLKLY CPCFAGGGYC SEKCGCQPCF NKDAFAETVH NTRKVLLSRQ  120
KRMSMKINRR SEVNADAMED AHNSSSSTPP RRSCNCKKSS CLKKYCDCYQ EGTGCSLFCR  180
CEDCQNPFGK NEGIMAEDSK RYLYTGADLD HSEGEHEFVV ERSPRLQSPI SKESCFQTPP  240
HLRASTRDTH VFPQAQLQWQ ALPRSWHCSK RSSNDRVMDD SGNYKNSSHE WVLSKHEDSY  300
SISKCIQILN SMVELSQVEK SVAPDVFLTQ GNREIFISLG GDVRALWLKR KIQHLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03488A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810095.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A0A8ZWM00.0A0A0A8ZWM0_ARUDO; Uncharacterized protein
STRINGPavir.Ca01393.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.13e-29Tesmin/TSO1-like CXC domain-containing protein